BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0337500 Os03g0337500|J033101D19
(114 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40540.1 | chr2:16931445-16934516 FORWARD LENGTH=795 160 1e-40
AT1G70300.1 | chr1:26477993-26481233 REVERSE LENGTH=783 152 4e-38
AT5G14880.1 | chr5:4814244-4817667 FORWARD LENGTH=782 149 4e-37
AT2G30070.1 | chr2:12835097-12838466 FORWARD LENGTH=713 134 9e-33
AT3G02050.1 | chr3:350815-354135 FORWARD LENGTH=790 129 2e-31
AT4G13420.1 | chr4:7797038-7802174 REVERSE LENGTH=786 118 6e-28
AT4G19960.1 | chr4:10813807-10816997 FORWARD LENGTH=824 115 7e-27
AT1G60160.1 | chr1:22188330-22191395 REVERSE LENGTH=828 111 7e-26
AT1G31120.1 | chr1:11104375-11107361 REVERSE LENGTH=797 108 7e-25
AT2G35060.2 | chr2:14775184-14778184 REVERSE LENGTH=794 105 5e-24
AT4G23640.1 | chr4:12320476-12324291 REVERSE LENGTH=776 99 6e-22
AT5G09400.1 | chr5:2916377-2920604 FORWARD LENGTH=859 94 1e-20
AT4G33530.1 | chr4:16126503-16130353 REVERSE LENGTH=856 87 1e-18
>AT2G40540.1 | chr2:16931445-16934516 FORWARD LENGTH=795
Length = 794
Score = 160 bits (405), Expect = 1e-40, Method: Composition-based stats.
Identities = 73/84 (86%), Positives = 80/84 (95%)
Query: 22 VRWPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQIYIPEINW 81
+ WPVL +AILASVVGSQAIISGTFSIINQSQSL CFPRVKV+HTSDK+HGQIYIPEINW
Sbjct: 340 LHWPVLAVAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVIHTSDKMHGQIYIPEINW 399
Query: 82 LLMILCIAVTVGFRDTKHMGNASG 105
+LMILCIAVT+GFRD KH+GNASG
Sbjct: 400 MLMILCIAVTIGFRDVKHLGNASG 423
>AT1G70300.1 | chr1:26477993-26481233 REVERSE LENGTH=783
Length = 782
Score = 152 bits (383), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 81/91 (89%)
Query: 15 YNQTTDKVRWPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQI 74
Y +++RWPVLV+AILA+VVGSQAII+GTFSII Q +L CFP+VK+VHTS KIHGQI
Sbjct: 337 YVSVPERLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQI 396
Query: 75 YIPEINWLLMILCIAVTVGFRDTKHMGNASG 105
YIPEINW+LM+LC+AVT+GFRDTK +GNASG
Sbjct: 397 YIPEINWILMVLCLAVTIGFRDTKRLGNASG 427
>AT5G14880.1 | chr5:4814244-4817667 FORWARD LENGTH=782
Length = 781
Score = 149 bits (375), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 79/92 (85%)
Query: 14 IYNQTTDKVRWPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQ 73
Y +++RWPVL +AILA+VVGSQAII+GTFSII Q SL CFP+VK+VHTS ++HGQ
Sbjct: 336 FYVSVPEQIRWPVLAIAILAAVVGSQAIITGTFSIIKQCTSLGCFPKVKIVHTSSRMHGQ 395
Query: 74 IYIPEINWLLMILCIAVTVGFRDTKHMGNASG 105
IYIPEINW LM+LC+AVTVGFRDTKH+ NASG
Sbjct: 396 IYIPEINWTLMLLCLAVTVGFRDTKHISNASG 427
>AT2G30070.1 | chr2:12835097-12838466 FORWARD LENGTH=713
Length = 712
Score = 134 bits (337), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%)
Query: 15 YNQTTDKVRWPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQI 74
Y + V WPV ++A A+VVGSQA+IS TFSII+Q +L CFPRVK++HTS KIHGQI
Sbjct: 334 YKAIPEPVFWPVFIVATFAAVVGSQAVISATFSIISQCCALDCFPRVKIIHTSSKIHGQI 393
Query: 75 YIPEINWLLMILCIAVTVGFRDTKHMGNASG 105
YIPE+NW+LM LC+AVT+G RDT MG+A G
Sbjct: 394 YIPEVNWMLMCLCLAVTIGLRDTNMMGHAYG 424
>AT3G02050.1 | chr3:350815-354135 FORWARD LENGTH=790
Length = 789
Score = 129 bits (325), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 72/92 (78%)
Query: 14 IYNQTTDKVRWPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQ 73
Y+ D V WPV V+A LA++VGSQA+I+ TFSII Q +L CFPR+KVVHTS I+GQ
Sbjct: 333 FYDSVPDPVFWPVFVIATLAAIVGSQAVITTTFSIIKQCHALGCFPRIKVVHTSKHIYGQ 392
Query: 74 IYIPEINWLLMILCIAVTVGFRDTKHMGNASG 105
IYIPEINW+LMIL +A+ +GFRDT +GNA G
Sbjct: 393 IYIPEINWILMILTLAMAIGFRDTTLIGNAYG 424
>AT4G13420.1 | chr4:7797038-7802174 REVERSE LENGTH=786
Length = 785
Score = 118 bits (296), Expect = 6e-28, Method: Composition-based stats.
Identities = 53/91 (58%), Positives = 70/91 (76%)
Query: 15 YNQTTDKVRWPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQI 74
Y+ D + WP V+A+ AS++ SQA+ISG FS+I+QS + CFPRVKVVHTS K GQ+
Sbjct: 361 YDSIPDPLYWPTFVVAVAASIIASQAMISGAFSVISQSLRMGCFPRVKVVHTSAKYEGQV 420
Query: 75 YIPEINWLLMILCIAVTVGFRDTKHMGNASG 105
YIPEIN+LLM+ CIAVT+ FR T+ +G+A G
Sbjct: 421 YIPEINYLLMLACIAVTLAFRTTEKIGHAYG 451
>AT4G19960.1 | chr4:10813807-10816997 FORWARD LENGTH=824
Length = 823
Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 71/104 (68%)
Query: 3 LFLWKKNKLAYIYNQTTDKVRWPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVK 62
L + K++ Y D V WP+ ++A A++VGSQA ISGT+SI+ Q+ + CFPRVK
Sbjct: 351 LVIHKEHYQDAFYASIPDSVYWPMFIVATGAAIVGSQATISGTYSIVKQAVAHGCFPRVK 410
Query: 63 VVHTSDKIHGQIYIPEINWLLMILCIAVTVGFRDTKHMGNASGK 106
+VHTS K GQIY P+INW+LM+ CIAVT F+ +GNA GK
Sbjct: 411 IVHTSKKFLGQIYCPDINWILMLGCIAVTASFKKQSQIGNAYGK 454
>AT1G60160.1 | chr1:22188330-22191395 REVERSE LENGTH=828
Length = 827
Score = 111 bits (278), Expect = 7e-26, Method: Composition-based stats.
Identities = 49/91 (53%), Positives = 64/91 (70%)
Query: 15 YNQTTDKVRWPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQI 74
Y+ + WPV V+A LA+++ SQA+IS TFS + Q+ +L CFPR+K++HTS K GQI
Sbjct: 396 YDSVPKSLFWPVFVIATLAAMIASQAMISATFSCVKQAMALGCFPRLKIIHTSKKRIGQI 455
Query: 75 YIPEINWLLMILCIAVTVGFRDTKHMGNASG 105
YIP INW LMI+CI V FR T H+ NA G
Sbjct: 456 YIPVINWFLMIMCILVVSIFRSTTHIANAYG 486
>AT1G31120.1 | chr1:11104375-11107361 REVERSE LENGTH=797
Length = 796
Score = 108 bits (269), Expect = 7e-25, Method: Composition-based stats.
Identities = 52/91 (57%), Positives = 67/91 (73%)
Query: 15 YNQTTDKVRWPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQI 74
Y +V WP+ ++A A++V SQA IS TFS+I Q+ + CFPRVKVVHTS K GQI
Sbjct: 362 YQSIPKRVYWPMFIIATAAAIVASQATISATFSLIKQALAHGCFPRVKVVHTSRKFLGQI 421
Query: 75 YIPEINWLLMILCIAVTVGFRDTKHMGNASG 105
Y+P+INW+LMILCIAVT GF++ +GNA G
Sbjct: 422 YVPDINWILMILCIAVTAGFKNQNQIGNAYG 452
>AT2G35060.2 | chr2:14775184-14778184 REVERSE LENGTH=794
Length = 793
Score = 105 bits (262), Expect = 5e-24, Method: Composition-based stats.
Identities = 51/91 (56%), Positives = 66/91 (72%)
Query: 15 YNQTTDKVRWPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQI 74
Y V WP+ ++A A++V SQA IS TFS++ Q+ + CFPRVKVVHTS K GQI
Sbjct: 364 YRSIPGSVYWPMFIIATAAAIVASQATISATFSLVKQALAHGCFPRVKVVHTSRKFLGQI 423
Query: 75 YIPEINWLLMILCIAVTVGFRDTKHMGNASG 105
Y+P+INW+LMILCIAVT GF++ +GNA G
Sbjct: 424 YVPDINWILMILCIAVTAGFKNQSQIGNAYG 454
>AT4G23640.1 | chr4:12320476-12324291 REVERSE LENGTH=776
Length = 775
Score = 98.6 bits (244), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 68/92 (73%)
Query: 14 IYNQTTDKVRWPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQ 73
Y+ D WPVL++A+LA++V SQA+I TFSI+ Q +L CFPRVK+VH + GQ
Sbjct: 319 FYSSIPDPFFWPVLMMAMLAAMVASQAVIFATFSIVKQCYALGCFPRVKIVHKPRWVLGQ 378
Query: 74 IYIPEINWLLMILCIAVTVGFRDTKHMGNASG 105
IYIPEINW++MIL +AVT+ FRDT+H+ A G
Sbjct: 379 IYIPEINWVVMILTLAVTICFRDTRHIAFAFG 410
>AT5G09400.1 | chr5:2916377-2920604 FORWARD LENGTH=859
Length = 858
Score = 94.0 bits (232), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 57/86 (66%)
Query: 24 WPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQIYIPEINWLL 83
WPVL +A +A+++ S+ + + TFS I QS +L CFPR+K++HTS K GQIYIP +NW L
Sbjct: 421 WPVLFIANIAALIASRTMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVLNWFL 480
Query: 84 MILCIAVTVGFRDTKHMGNASGKKKL 109
+ +C+ V +GNA G +L
Sbjct: 481 LAVCLVVVCSISSIDEIGNAYGMAEL 506
>AT4G33530.1 | chr4:16126503-16130353 REVERSE LENGTH=856
Length = 855
Score = 87.4 bits (215), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 60/86 (69%)
Query: 24 WPVLVLAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQIYIPEINWLL 83
WPV +++ +A+++ S+A+ + TF+ I QS +L CFPR+K++HTS K GQIYIP +NW L
Sbjct: 422 WPVFLISNVAALIASRAMTTATFTCIKQSIALGCFPRLKIIHTSKKFIGQIYIPVLNWSL 481
Query: 84 MILCIAVTVGFRDTKHMGNASGKKKL 109
+++C+ V + +GNA G +L
Sbjct: 482 LVVCLIVVCSTSNIFAIGNAYGIAEL 507
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,307,427
Number of extensions: 76488
Number of successful extensions: 248
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 13
Length of query: 114
Length of database: 11,106,569
Length adjustment: 83
Effective length of query: 31
Effective length of database: 8,831,041
Effective search space: 273762271
Effective search space used: 273762271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)