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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0328300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.66 (0.0395) R2 : 0.0836
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.594 (0.102) R2dC : 0.0681 R2C : 0.0656
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.219 (0.0832) R2dN8 : 0.0179 R2N8 : 0.0155
σ : 0.746
deviance : 254.09
__
_____
C
peak time of C : 16.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
240.5 0.729 3.92 -2.34 0.597 1.72 0.337 -12.7 -0.191 16.2 29.7 1408 -- --
248.42 0.734 3.68 -0.14 0.564 0.456 0.145 -- -0.324 16.6 19.21 1724 -- --
240.81 0.723 3.92 -2.36 0.599 1.72 -- -12.7 -0.2 16.2 29.65 1403 -- --
248.28 0.739 3.67 -0.0068 0.396 0.594 -- -- -0.287 17.5 23.66 25 -- --
259.87 0.751 3.93 -2.43 -- 1.68 -- -12.8 -0.254 -- 29.49 1421 -- --
253.5 0.746 3.66 0.093 0.593 -- 0.364 -- -0.21 16.5 -- -- -- --
253.85 0.746 3.65 0.0955 0.595 -- -- -- -0.208 16.5 -- -- -- --
250.56 0.737 3.66 -0.052 -- 0.903 -- -- -0.27 -- 25.27 328 -- --
247.82 0.733 3.67 -- 0.367 0.586 -- -- -0.292 17.1 22.93 98 -- --
272.8 0.772 3.65 0.0724 -- -- -- -- -0.224 -- -- -- -- --
254.09 0.746 3.66 -- 0.594 -- -- -- -0.219 16.5 -- -- -- --
250.64 0.737 3.66 -- -- 0.879 -- -- -0.27 -- 25.2 326 -- --
272.93 0.771 3.65 -- -- -- -- -- -0.232 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 236.46 atmosphere 1005.0 1440 < th dose independent rect. 20 1
2 236.56 humidity 60.0 43200 < th dose independent rect. 24 8
3 236.66 humidity 60.0 43200 > th dose independent rect. 24 8
12 237.22 wind 1.0 4320 < th dose independent rect. 5 1
16 237.32 atmosphere 1005.0 1440 > th dose independent rect. 20 1
17 237.53 wind 1.0 43200 < th dose independent rect. 8 1
18 237.66 wind 3.0 14400 < th dose dependent rect. 5 1
22 237.93 wind 1.0 4320 > th dose independent rect. 5 1
25 238.04 wind 1.0 43200 < th dose dependent rect. 8 2
26 238.17 humidity 70.0 43200 < th dose dependent rect. 4 3
34 238.37 humidity 60.0 43200 > th dose independent rect. 4 3
35 238.46 radiation 40.0 14400 > th dose dependent rect. 15 1
54 238.63 temperature 30.0 1440 > th dose dependent rect. 14 1
66 239.01 precipitation 0.1 14400 < th dose independent rect. 6 8
68 239.01 precipitation 0.1 14400 < th dose dependent rect. 6 8
74 239.10 precipitation 0.1 14400 > th dose independent rect. 6 8
83 239.23 humidity 90.0 14400 > th dose dependent rect. 17 1
85 239.25 precipitation 0.1 14400 > th dose independent rect. 8 1
86 239.25 precipitation 0.1 14400 > th dose dependent rect. 8 1
87 239.26 wind 9.0 14400 < th dose independent rect. 19 1
90 239.27 precipitation 0.1 14400 < th dose independent rect. 7 6
93 239.27 precipitation 0.1 14400 < th dose dependent rect. 7 6
95 239.30 precipitation 0.1 14400 < th dose independent rect. 7 4
97 239.30 precipitation 0.1 14400 < th dose dependent rect. 7 4
101 239.35 humidity 80.0 14400 > th dose independent rect. 8 2
104 239.37 precipitation 0.1 14400 > th dose independent rect. 7 4
106 239.37 precipitation 0.1 14400 > th dose dependent rect. 7 4
109 239.39 wind 1.0 14400 > th dose dependent rect. 4 2
113 239.41 precipitation 0.1 14400 > th dose dependent rect. 6 7
128 239.51 wind 9.0 14400 > th dose dependent rect. 18 20
133 239.53 precipitation 0.1 14400 < th dose independent rect. 8 2
134 239.53 radiation 10.0 10 < th dose dependent rect. 10 2
135 239.53 precipitation 0.1 14400 < th dose dependent rect. 8 2
140 239.55 wind 5.0 14400 > th dose independent rect. 8 1
151 239.59 wind 1.0 43200 < th dose dependent rect. 5 7
156 239.60 humidity 50.0 720 > th dose independent rect. 1 22
159 239.61 radiation 40.0 14400 > th dose independent rect. 15 1
178 239.62 wind 9.0 14400 > th dose independent rect. 19 1
184 239.65 wind 5.0 14400 < th dose independent rect. 8 1
193 239.72 wind 3.0 14400 > th dose dependent rect. 8 1
215 239.81 temperature 15.0 14400 > th dose independent rect. 6 3
218 239.83 wind 5.0 14400 < th dose independent rect. 8 3
235 239.90 temperature 30.0 1440 > th dose dependent rect. 14 21
239 239.92 wind 5.0 14400 < th dose independent rect. 6 5
264 240.05 wind 5.0 14400 > th dose independent rect. 6 5
268 240.07 wind 9.0 14400 > th dose dependent rect. 22 1
270 240.09 wind 9.0 14400 > th dose dependent rect. 19 1
273 240.10 wind 5.0 14400 > th dose dependent rect. 6 5
275 240.11 wind 5.0 14400 < th dose independent rect. 4 7
283 240.15 wind 5.0 14400 < th dose independent rect. 2 10
293 240.17 temperature 25.0 10 > th dose dependent rect. 17 13
295 240.18 wind 9.0 14400 > th dose independent rect. 18 19
303 240.20 humidity 80.0 14400 < th dose independent rect. 8 3
305 240.20 wind 5.0 14400 > th dose independent rect. 4 7
308 240.21 wind 9.0 14400 < th dose independent rect. 18 19
314 240.22 wind 5.0 14400 > th dose independent rect. 2 10
341 240.25 temperature 15.0 14400 > th dose independent rect. 8 1
342 240.25 humidity 60.0 43200 < th dose independent rect. 5 2
354 240.27 temperature 30.0 1440 > th dose dependent rect. 9 7
363 240.29 wind 1.0 14400 > th dose dependent rect. 3 6
389 240.32 temperature 25.0 10 > th dose dependent rect. 17 8
411 240.37 precipitation 0.1 14400 < th dose independent rect. 12 1
414 240.37 precipitation 0.1 14400 < th dose dependent rect. 12 1
427 240.39 wind 5.0 14400 > th dose dependent rect. 4 7
428 240.40 radiation 1.0 10 < th dose independent rect. 7 5
434 240.40 radiation 1.0 10 < th dose dependent rect. 7 5
453 240.42 wind 5.0 14400 > th dose dependent rect. 23 13
470 240.45 wind 1.0 43200 > th dose independent rect. 8 1
487 240.47 wind 7.0 14400 > th dose independent rect. 21 15
492 240.48 wind 7.0 14400 < th dose independent rect. 21 15
493 240.48 humidity 90.0 14400 < th dose dependent rect. 12 1
518 240.50 humidity 50.0 720 > th dose independent rect. 1 16
526 240.51 wind 1.0 43200 < th dose dependent rect. 4 23
529 240.53 radiation 1.0 90 < th dose independent rect. 10 1
531 240.53 wind 1.0 1440 < th dose independent rect. 5 6
534 240.53 radiation 1.0 90 < th dose dependent rect. 10 1
548 240.56 temperature 30.0 1440 > th dose dependent sin 20 NA
553 240.57 humidity 70.0 14400 > th dose independent rect. 11 2
555 240.57 wind 1.0 1440 < th dose independent rect. 5 10
599 240.60 temperature 30.0 1440 > th dose dependent no NA NA
754 240.64 radiation 10.0 14400 > th dose independent rect. 9 2
772 240.67 precipitation 0.1 14400 > th dose independent rect. 12 1
775 240.67 precipitation 0.1 14400 > th dose dependent rect. 12 1
776 240.67 wind 5.0 14400 > th dose dependent rect. 21 15
805 240.75 humidity 70.0 14400 > th dose independent rect. 10 5
823 240.76 wind 9.0 14400 < th dose independent rect. 10 1
825 240.76 radiation 10.0 4320 > th dose dependent rect. 17 1
849 240.78 wind 1.0 43200 < th dose dependent rect. 22 19
857 240.81 wind 9.0 14400 > th dose dependent sin 8 NA
932 240.96 wind 5.0 14400 < th dose independent rect. 22 1
936 240.96 precipitation 0.1 14400 > th dose dependent rect. 5 13
992 241.08 temperature 20.0 14400 < th dose dependent rect. 16 1