BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0328300 Os03g0328300|J075065B20
(55 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G03290.1 | chr2:999422-1000434 FORWARD LENGTH=214 59 5e-10
AT1G14010.1 | chr1:4800385-4801790 REVERSE LENGTH=213 59 5e-10
AT1G26690.1 | chr1:9224299-9225682 REVERSE LENGTH=215 57 2e-09
AT1G69460.1 | chr1:26112054-26113160 REVERSE LENGTH=215 57 3e-09
AT3G29070.1 | chr3:11050193-11051153 FORWARD LENGTH=226 49 6e-07
AT1G57620.1 | chr1:21342863-21344581 FORWARD LENGTH=213 46 5e-06
>AT2G03290.1 | chr2:999422-1000434 FORWARD LENGTH=214
Length = 213
Score = 58.9 bits (141), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 2 LFFFSASEGEMQKLNEDTTMKIHSFTLLSLAVCVGVAGLQLWHLKTFFQKRHIL 55
+++ E EMQ+LN T K+ + SL VC+ VAGLQ WHLKTFF+K+ ++
Sbjct: 160 MYYLREREEEMQELNRSTNSKMAWLSFGSLVVCLSVAGLQFWHLKTFFEKKKLI 213
>AT1G14010.1 | chr1:4800385-4801790 REVERSE LENGTH=213
Length = 212
Score = 58.9 bits (141), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 2 LFFFSASEGEMQKLNEDTTMKIHSFTLLSLAVCVGVAGLQLWHLKTFFQKRHIL 55
+F+ E EM LN T K+ + +SLAVC+ VAGLQ WHLKTFFQK+ ++
Sbjct: 159 MFYLRDREEEMHNLNIATNSKMAWLSFVSLAVCLSVAGLQFWHLKTFFQKKKLI 212
>AT1G26690.1 | chr1:9224299-9225682 REVERSE LENGTH=215
Length = 214
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 2 LFFFSASEGEMQKLNEDTTMKIHSFTLLSLAVCVGVAGLQLWHLKTFFQKRHIL 55
+F+ E EMQ LN T K+ + LSL VC+GVAG+Q HLKTFF+K+ ++
Sbjct: 161 MFYLREREEEMQNLNRATNSKMAWLSFLSLFVCLGVAGMQFVHLKTFFEKKKVI 214
>AT1G69460.1 | chr1:26112054-26113160 REVERSE LENGTH=215
Length = 214
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 2 LFFFSASEGEMQKLNEDTTMKIHSFTLLSLAVCVGVAGLQLWHLKTFFQKRHIL 55
+++ E EMQ LN T K+ ++LS VC+GVAG+Q HLKTFF+K+ ++
Sbjct: 161 MYYLRDREEEMQDLNRSTNTKMAWLSVLSFFVCIGVAGMQFLHLKTFFEKKKVI 214
>AT3G29070.1 | chr3:11050193-11051153 FORWARD LENGTH=226
Length = 225
Score = 48.5 bits (114), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 2 LFFFSASEGEMQKLNEDTTMKIHSFTLLSLAVCVGVAGLQLWHLKTFFQKRHIL 55
+F E EMQ+LN T ++ + +LLS V + VAGLQL HLK+F +++ +L
Sbjct: 172 MFQLIEREREMQELNRSTNSRMAALSLLSFVVTMSVAGLQLRHLKSFLERKKLL 225
>AT1G57620.1 | chr1:21342863-21344581 FORWARD LENGTH=213
Length = 212
Score = 45.8 bits (107), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 38/55 (69%)
Query: 1 SLFFFSASEGEMQKLNEDTTMKIHSFTLLSLAVCVGVAGLQLWHLKTFFQKRHIL 55
+L + E EM+ ++E T ++ ++++SL +C+ V+GLQ+ +LK +F+K+ ++
Sbjct: 158 NLIYLRNREAEMRIVSEKTNSRVAWYSIMSLGICIVVSGLQILYLKQYFEKKKLI 212
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,051,636
Number of extensions: 25607
Number of successful extensions: 81
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 7
Length of query: 55
Length of database: 11,106,569
Length adjustment: 28
Effective length of query: 27
Effective length of database: 10,338,921
Effective search space: 279150867
Effective search space used: 279150867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)