Os03g0326600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os03g0326600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.13 | 0.29 | 9.68 | 0.0569 | 0.804 | -1.11 | -0.346 | 0.474 | 0.0739 | 11 | 18.19 | 373 | -- | -- |
| 38.31 | 0.288 | 9.69 | -0.0349 | 0.794 | -1.08 | -0.34 | -- | 0.0536 | 10.9 | 18 | 381 | -- | -- |
| 38.63 | 0.289 | 9.68 | 0.0461 | 0.807 | -1.11 | -- | 0.502 | 0.0781 | 11 | 18.27 | 371 | -- | -- |
| 38.8 | 0.29 | 9.69 | -0.0405 | 0.808 | -1.12 | -- | -- | 0.0507 | 11.1 | 17.86 | 368 | -- | -- |
| 60.14 | 0.361 | 9.66 | 0.465 | -- | -1.46 | -- | 2.3 | 0.149 | -- | 23.77 | 806 | -- | -- |
| 56.71 | 0.353 | 9.73 | -0.294 | 0.931 | -- | -0.492 | -- | -0.139 | 9.42 | -- | -- | -- | -- |
| 57.58 | 0.355 | 9.73 | -0.311 | 0.932 | -- | -- | -- | -0.139 | 9.48 | -- | -- | -- | -- |
| 62.7 | 0.369 | 9.71 | -0.00143 | -- | -1.27 | -- | -- | 0.044 | -- | 23.25 | 790 | -- | -- |
| 38.83 | 0.29 | 9.69 | -- | 0.81 | -1.14 | -- | -- | 0.0592 | 11.1 | 17.7 | 364 | -- | -- |
| 108.64 | 0.487 | 9.75 | -0.317 | -- | -- | -- | -- | -0.136 | -- | -- | -- | -- | -- |
| 60.14 | 0.363 | 9.72 | -- | 0.932 | -- | -- | -- | -0.105 | 9.5 | -- | -- | -- | -- |
| 62.7 | 0.369 | 9.71 | -- | -- | -1.27 | -- | -- | 0.0448 | -- | 23.26 | 791 | -- | -- |
| 111.3 | 0.492 | 9.74 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 17 |
| 8 | 31.40 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 13 | 31.75 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 6 |
| 15 | 32.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 21 |
| 36 | 32.86 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 18 |
| 43 | 33.20 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 55 | 33.46 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 20 |
| 65 | 33.74 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 20 |
| 146 | 35.43 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 18 |
| 155 | 35.51 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 13 | 17 |
| 184 | 35.86 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 19 |
| 206 | 36.08 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 209 | 36.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 8 |
| 212 | 36.16 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 18 |
| 236 | 36.37 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 9 |
| 248 | 36.45 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 18 |
| 264 | 36.55 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 266 | 36.56 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 19 |
| 268 | 36.57 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 279 | 36.62 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 6 |
| 288 | 36.67 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 289 | 36.70 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 17 |
| 294 | 36.72 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 15 |
| 335 | 36.98 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 346 | 37.02 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 9 |
| 356 | 37.09 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 18 |
| 363 | 37.14 | radiation | 40.0 | 270 | < th | dose independent | rect. | 5 | 19 |
| 368 | 37.17 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 371 | 37.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 9 |
| 377 | 37.22 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 394 | 37.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 16 |
| 402 | 37.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 6 |
| 403 | 37.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 410 | 37.40 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 412 | 37.41 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 419 | 37.43 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 425 | 37.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 426 | 37.45 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 427 | 37.45 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 430 | 37.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 6 |
| 434 | 37.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 18 |
| 437 | 37.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 467 | 37.62 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 18 |
| 508 | 37.75 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 512 | 37.76 | radiation | 1.0 | 270 | < th | dose independent | rect. | 9 | 14 |
| 541 | 37.90 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 542 | 37.90 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 556 | 37.96 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 562 | 37.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 17 |
| 564 | 37.99 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 10 | 14 |
| 565 | 37.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 17 |
| 603 | 38.09 | wind | 9.0 | 270 | < th | dose dependent | rect. | 24 | 4 |
| 661 | 38.24 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 17 |
| 665 | 38.25 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 669 | 38.25 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 17 |
| 673 | 38.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 7 |
| 696 | 38.31 | temperature | 20.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 714 | 38.37 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 24 | 7 |
| 742 | 38.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 749 | 38.46 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 18 |
| 762 | 38.50 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 17 |
| 815 | 38.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 18 |
| 819 | 38.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 820 | 38.61 | wind | 3.0 | 270 | < th | dose independent | rect. | 24 | 4 |
| 881 | 38.69 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 889 | 38.70 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 7 |
| 890 | 38.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 15 |
| 891 | 38.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 15 |
| 970 | 38.83 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 5 | 18 |
| 979 | 38.86 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 7 |