BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0326600 Os03g0326600|AK107632
         (467 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09230.1  | chr1:2979637-2982563 REVERSE LENGTH=443            447   e-126

>AT1G09230.1 | chr1:2979637-2982563 REVERSE LENGTH=443
          Length = 442

 Score =  447 bits (1150), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/428 (54%), Positives = 285/428 (66%), Gaps = 23/428 (5%)

Query: 44  TLLVRHLPEAIPQEMLSRLFSHYGATSVRPCAGGKLRNCAFVDFRDEVVASQAQSLLNRL 103
           TLLVRHLP+ IP +++SRLFS YGA++VRPC+GGKLRN AFVDF++E  ASQA   LN L
Sbjct: 29  TLLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGL 88

Query: 104 RFLGKVLIVERANQPNSKNANEKQQEHEAQG-ALQVPSMNSLNQKNPISSAEPIAPRLGV 162
           RFLGKVL V+RAN+PN    + + +E   +G A    S N+ ++   I S EPIAP+LG+
Sbjct: 89  RFLGKVLQVQRANKPNDNKKSRQIEESVTKGNAFSTVSTNNDSKSGQILSGEPIAPKLGI 148

Query: 163 DYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNLPAPFRMXXXXXXXX 222
           DYPFPPHL+YAYPPPD NIL NI NALIAVP  YTQVLHLMNKMNLP PFR+        
Sbjct: 149 DYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMNLPPPFRLALPTPPLP 208

Query: 223 XXXXXXXXXXXXXXXXXXNKPHLTXXXXXXXXXXXXXXXVD----KRKVKRTKHEAIVGP 278
                               P  T                D    K   KR +H  +VG 
Sbjct: 209 KAG-----------------PQQTDLEHQSSSESEMESDEDIGTSKSGRKRARHGFLVGL 251

Query: 279 AVDKSIAHEAVGVKPAALVSSELQVIKKKNPVLQINIAPKAAQKELTVQSTT-DKELVPT 337
            +DK + HE VGVKP++L   E+  I+K   V+QI I  K  Q E   +S   D    P 
Sbjct: 252 GMDKDVPHETVGVKPSSLTPKEIPRIRKNKHVMQIKITSKVTQDEYKEESENEDPADEPK 311

Query: 338 AEQLQGKHFVTPQDIEKEKLPPEEILSLPMFKNYTPGNPASVLYIKNLAKDVIQDDFYYV 397
            +    K F + +++EK +LPP++ILSLPMFKNYT GNP+ VLYIKNLAKDV+ DDFYY+
Sbjct: 312 EKDSNLKPFASLEELEKGRLPPQDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYI 371

Query: 398 FGSVFENMDIARSSLSIKLMQEGRMRGQAFVTFPSVELAQRALNLVHGFVFKGKPMIIQF 457
           FGS FE+ ++A+SSL ++LMQEGRMRGQAF+TFPSVE+A RALNLV+GFVFKGKPMIIQF
Sbjct: 372 FGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQF 431

Query: 458 GRNPAANK 465
           GR P A K
Sbjct: 432 GRTPGAAK 439



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,167,283
Number of extensions: 324442
Number of successful extensions: 1202
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1209
Number of HSP's successfully gapped: 2
Length of query: 467
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 365
Effective length of database: 8,310,137
Effective search space: 3033200005
Effective search space used: 3033200005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)