Os03g0323200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protoporphyrin IX Mg-chelatase subunit precursor.
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Os03g0323200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protoporphyrin IX Mg-chelatase subunit precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.15 | 0.441 | 12.8 | -0.668 | 2.05 | -2.1 | 1.23 | 4.33 | -0.791 | 9.76 | 15.23 | 269 | 16.1 | 9.18 |
| 97.8 | 0.461 | 12.8 | -0.881 | 2.23 | -1.96 | -0.696 | -- | -0.851 | 9.82 | 16.05 | 220 | 16.7 | 9.03 |
| 90.98 | 0.444 | 12.8 | -0.722 | 2.03 | -2.16 | -- | 3.19 | -0.819 | 9.48 | 14.88 | 292 | 16 | 9.35 |
| 98.61 | 0.463 | 12.8 | -0.974 | 1.79 | -2.33 | -- | -- | -0.893 | 9.33 | 12.79 | 291 | 16 | 9.38 |
| 133.67 | 0.538 | 13 | -0.296 | -- | -3.64 | -- | 2.46 | -0.779 | -- | 6.644 | 352 | 14.6 | 10.6 |
| 140.75 | 0.556 | 12.8 | -1.14 | 3.44 | -- | -0.392 | -- | -1.02 | 9.91 | -- | -- | -- | -- |
| 141.35 | 0.557 | 12.8 | -1.16 | 3.45 | -- | -- | -- | -1.02 | 9.91 | -- | -- | -- | -- |
| 108.48 | 0.485 | 12.9 | -0.911 | -- | -3.99 | -- | -- | -0.902 | -- | 4.348 | 366 | 14.6 | 9.74 |
| 122.96 | 0.516 | 12.8 | -- | 1.77 | -2.46 | -- | -- | -0.829 | 9.15 | 13.26 | 297 | 16 | 9.55 |
| 853.04 | 1.36 | 12.9 | -1.19 | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
| 176.57 | 0.622 | 12.8 | -- | 3.45 | -- | -- | -- | -0.888 | 9.93 | -- | -- | -- | -- |
| 130.71 | 0.532 | 12.9 | -- | -- | -4.03 | -- | -- | -0.838 | -- | 5.58 | 362 | 14.6 | 9.8 |
| 890.71 | 1.39 | 12.9 | -- | -- | -- | -- | -- | -0.884 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 9 |
| 49 | 101.33 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 10 |
| 71 | 104.20 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 6 |
| 81 | 104.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 18 |
| 85 | 105.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 94 | 105.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 96 | 105.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 17 |
| 130 | 107.36 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 2 |
| 182 | 108.68 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 16 |
| 214 | 109.39 | temperature | 20 | 270 | > th | dose dependent | sin | 13 | NA |
| 364 | 112.16 | temperature | 25 | 90 | < th | dose dependent | sin | 15 | NA |
| 408 | 112.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 18 |
| 442 | 112.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 10 |
| 499 | 113.40 | temperature | 20 | 720 | > th | dose dependent | sin | 18 | NA |
| 542 | 113.85 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 18 |
| 660 | 114.61 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 17 |
| 761 | 115.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 908 | 116.29 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 2 |
| 916 | 116.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 949 | 116.45 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 11 |
| 966 | 116.59 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 8 |
| 978 | 116.63 | temperature | 25 | 10 | > th | dose independent | rect. | 18 | 5 |