Os03g0322600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0322600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.29 | 0.439 | 12.9 | -2.79 | 2.18 | 1.48 | 0.621 | -3.23 | -1.06 | 16.3 | 24.75 | 97 | -- | -- |
| 90.52 | 0.443 | 12.8 | -2.43 | 2.23 | 1.25 | 0.135 | -- | -1 | 16.2 | 23.33 | 110 | -- | -- |
| 88.16 | 0.437 | 12.9 | -2.71 | 2.18 | 1.46 | -- | -2.57 | -1.03 | 16.3 | 24.75 | 95 | -- | -- |
| 90.4 | 0.443 | 12.8 | -2.41 | 2.22 | 1.22 | -- | -- | -0.996 | 16.3 | 23.45 | 97 | -- | -- |
| 238.17 | 0.719 | 12.9 | -3.49 | -- | 3.63 | -- | -5.49 | -1.38 | -- | 24.3 | 151 | -- | -- |
| 114.09 | 0.501 | 12.8 | -2.18 | 2.72 | -- | 0.584 | -- | -0.832 | 16.1 | -- | -- | -- | -- |
| 115.05 | 0.502 | 12.8 | -2.18 | 2.73 | -- | -- | -- | -0.829 | 16.1 | -- | -- | -- | -- |
| 251.97 | 0.739 | 12.9 | -2.77 | -- | 3.17 | -- | -- | -1.21 | -- | 24.2 | 160 | -- | -- |
| 233.16 | 0.715 | 12.7 | -- | 2.55 | 0.663 | -- | -- | -0.61 | 16.3 | 25.7 | 26 | -- | -- |
| 518.26 | 1.06 | 12.8 | -2.29 | -- | -- | -- | -- | -0.902 | -- | -- | -- | -- | -- |
| 240.01 | 0.725 | 12.7 | -- | 2.77 | -- | -- | -- | -0.587 | 16.1 | -- | -- | -- | -- |
| 451.05 | 0.989 | 12.8 | -- | -- | 2.74 | -- | -- | -0.848 | -- | 24.38 | 151 | -- | -- |
| 656.28 | 1.2 | 12.7 | -- | -- | -- | -- | -- | -0.648 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.56 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 2 | 75.35 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 4 | 75.79 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 27 | 79.18 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 39 | 80.30 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 42 | 80.62 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 57 | 81.77 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 75 | 82.51 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 80 | 82.54 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 89 | 82.82 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 152 | 84.38 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 3 |
| 169 | 84.82 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 11 |
| 193 | 85.19 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 18 |
| 234 | 85.71 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 238 | 85.71 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 241 | 85.76 | temperature | 30.0 | 30 | < th | dose dependent | sin | 23 | NA |
| 243 | 85.76 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 253 | 85.81 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 17 |
| 261 | 85.85 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 297 | 86.11 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 341 | 86.60 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 23 | 21 |
| 361 | 86.75 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 365 | 86.80 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 376 | 86.86 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 19 | 14 |
| 384 | 86.94 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 395 | 86.99 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 8 |
| 423 | 87.33 | temperature | 15.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 433 | 87.38 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 442 | 87.43 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 446 | 87.46 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 483 | 87.68 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 13 |
| 504 | 87.75 | temperature | 25.0 | 90 | > th | dose independent | rect. | 7 | 13 |
| 527 | 87.85 | radiation | 1.0 | 720 | < th | dose independent | rect. | 4 | 18 |
| 530 | 87.87 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 21 | 14 |
| 532 | 87.87 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 562 | 88.04 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 20 |
| 602 | 88.27 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 623 | 88.37 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 17 |
| 627 | 88.37 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 633 | 88.40 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 678 | 88.58 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 18 |
| 691 | 88.63 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 732 | 88.83 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 762 | 88.93 | temperature | 20.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 771 | 88.97 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 10 |
| 830 | 89.19 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 23 | 10 |
| 831 | 89.19 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 940 | 89.66 | radiation | 1.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 954 | 89.71 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 23 | 19 |
| 955 | 89.71 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 23 | 19 |
| 963 | 89.76 | humidity | 80.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 970 | 89.78 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 983 | 89.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 13 |