FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0322000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Centromere protein-like protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0205) R2 : 0.00683
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0766 (0.0432) R2dN8 : 0.00882 R2N8 : 0.00683
σ : 0.387
deviance : 68.64
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.88 0.384 3.08 0.109 0.0521 -0.337 -0.188 1.39 0.0675 2.91 50 4301 -- --
68.31 0.385 3.12 0.0507 0.043 -0.0813 -0.158 -- 0.0628 2.7 56 2299 -- --
66.93 0.381 3.08 0.12 0.0664 -0.34 -- 1.38 0.0696 5.12 49.49 4279 -- --
68.3 0.385 3.12 0.0618 0.057 -0.0685 -- -- 0.0657 5.23 53 2457 -- --
67.15 0.382 3.08 0.108 -- -0.309 -- 1.32 0.0717 -- 49.37 4300 -- --
68.38 0.388 3.11 0.0428 0.0481 -- 0.163 -- 0.0814 7.85 -- -- -- --
68.4 0.387 3.11 0.0458 0.0593 -- -- -- 0.0804 5.76 -- -- -- --
68.48 0.385 3.12 0.0639 -- -0.0621 -- -- 0.0678 -- 61 2402 -- --
68.39 0.385 3.12 -- 0.06 -0.0559 -- -- 0.0626 5.33 55.7 2459 -- --
68.58 0.387 3.11 0.0477 -- -- -- -- 0.0818 -- -- -- -- --
68.46 0.387 3.11 -- 0.06 -- -- -- 0.0753 5.73 -- -- -- --
68.56 0.386 3.12 -- -- -0.0583 -- -- 0.062 -- 61 2403 -- --
68.64 0.387 3.12 -- -- -- -- -- 0.0766 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.20 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 64.25 temperature 30.0 10 < th dose dependent rect. 2 1
3 64.28 atmosphere 1000.0 30 > th dose independent rect. 3 23
4 64.30 humidity 90.0 10 > th dose dependent rect. 2 1
5 64.31 atmosphere 1015.0 10 < th dose dependent rect. 2 1
6 64.33 wind 1.0 10 < th dose independent rect. 2 1
7 64.33 wind 3.0 10 < th dose dependent rect. 2 1
11 64.34 radiation 1.0 43200 < th dose dependent rect. 3 1
14 64.36 temperature 25.0 10 < th dose independent rect. 2 1
20 64.39 temperature 10.0 10 > th dose independent rect. 2 1
23 64.39 humidity 50.0 10 > th dose independent rect. 2 1
26 64.39 atmosphere 995.0 10 > th dose independent rect. 2 1
27 64.39 atmosphere 1010.0 10 < th dose independent rect. 2 1
29 64.39 radiation 1.0 10 < th dose independent rect. 2 1
34 64.39 precipitation 0.1 10 < th dose independent rect. 2 1
35 64.39 temperature 10.0 10 > th dose independent rect. 3 23
36 64.39 radiation 1.0 10 < th dose dependent rect. 2 1
41 64.39 precipitation 0.1 10 < th dose dependent rect. 2 1
42 64.41 atmosphere 1005.0 10 > th dose dependent rect. 2 2
44 64.43 humidity 50.0 10 > th dose dependent rect. 2 1
49 64.45 temperature 10.0 10 > th dose dependent rect. 2 1
57 64.48 humidity 90.0 10 > th dose independent rect. 2 1
59 64.48 atmosphere 995.0 10 > th dose dependent rect. 2 1
113 64.59 wind 1.0 30 > th dose independent rect. 2 1
117 64.68 wind 9.0 10 < th dose independent rect. 3 23
119 64.72 precipitation 0.1 10 < th dose independent rect. 3 23
122 64.72 precipitation 0.1 10 < th dose dependent rect. 3 23
132 64.87 temperature 25.0 30 > th dose independent rect. 20 3
138 64.90 wind 9.0 1440 < th dose independent rect. 3 1
139 64.90 temperature 10.0 1440 > th dose independent rect. 3 1
142 64.90 temperature 30.0 1440 < th dose independent rect. 3 1
146 64.90 humidity 50.0 1440 > th dose independent rect. 3 1
155 64.90 atmosphere 995.0 1440 > th dose independent rect. 3 1
156 64.90 radiation 1.0 1440 < th dose independent rect. 3 1
176 64.90 temperature 10.0 1440 > th dose independent rect. 4 23
192 64.95 temperature 25.0 30 > th dose dependent rect. 20 4
195 64.98 radiation 10.0 1440 < th dose dependent rect. 21 1
197 64.99 humidity 90.0 30 < th dose dependent rect. 20 1
198 65.01 wind 7.0 30 < th dose dependent rect. 20 1
200 65.02 wind 5.0 30 < th dose independent rect. 20 1
203 65.02 atmosphere 1015.0 30 < th dose dependent rect. 20 1
204 65.03 wind 1.0 30 > th dose independent rect. 20 1
206 65.03 temperature 10.0 30 > th dose independent rect. 20 1
208 65.03 temperature 30.0 30 < th dose independent rect. 20 1
209 65.03 humidity 50.0 30 > th dose independent rect. 20 1
212 65.03 atmosphere 995.0 30 > th dose independent rect. 20 1
215 65.03 atmosphere 1010.0 30 < th dose independent rect. 20 1
217 65.03 radiation 1.0 30 < th dose independent rect. 20 1
222 65.03 precipitation 0.1 30 < th dose independent rect. 20 1
224 65.03 temperature 10.0 30 > th dose independent rect. 21 23
225 65.03 radiation 1.0 30 < th dose dependent rect. 20 1
230 65.03 precipitation 0.1 30 < th dose dependent rect. 20 1
232 65.05 temperature 10.0 30 > th dose dependent rect. 20 1
233 65.05 atmosphere 995.0 30 > th dose dependent rect. 20 1
236 65.06 humidity 50.0 30 > th dose dependent rect. 20 1
241 65.07 humidity 90.0 30 < th dose independent rect. 20 1
245 65.08 temperature 30.0 30 < th dose dependent rect. 20 1
256 65.12 wind 1.0 30 > th dose dependent rect. 20 1
264 65.14 temperature 10.0 1440 > th dose independent rect. 21 1
267 65.14 temperature 30.0 1440 < th dose independent rect. 21 1
271 65.14 humidity 50.0 1440 > th dose independent rect. 21 1
278 65.14 atmosphere 995.0 1440 > th dose independent rect. 21 1
279 65.14 radiation 1.0 1440 < th dose independent rect. 21 1
299 65.14 temperature 10.0 1440 > th dose independent rect. 22 23
352 65.27 humidity 50.0 30 > th dose independent rect. 3 23
373 65.43 wind 1.0 10 < th dose independent rect. 13 14
399 65.57 precipitation 0.1 720 < th dose independent rect. 15 8
400 65.57 precipitation 0.1 720 < th dose dependent rect. 15 8
407 65.61 humidity 90.0 90 < th dose independent rect. 2 1
436 65.66 temperature 10.0 720 > th dose independent rect. 15 8
437 65.66 temperature 10.0 720 > th dose independent rect. 23 16
439 65.67 temperature 10.0 720 > th dose independent rect. 3 8
440 65.67 atmosphere 995.0 720 > th dose independent rect. 3 8
441 65.67 temperature 10.0 720 > th dose independent rect. 11 16
446 65.70 atmosphere 995.0 720 > th dose independent rect. 23 16
448 65.71 wind 9.0 30 < th dose independent rect. 21 23
451 65.73 precipitation 0.1 720 < th dose independent rect. 11 16
452 65.73 precipitation 0.1 720 < th dose dependent rect. 11 16
453 65.74 wind 1.0 10 < th dose independent rect. 8 19
456 65.75 temperature 20.0 30 > th dose dependent rect. 20 7
457 65.76 humidity 50.0 720 > th dose independent rect. 3 8
458 65.76 wind 1.0 10 < th dose independent rect. 6 21
478 65.78 wind 9.0 720 < th dose independent rect. 3 8
479 65.78 temperature 25.0 270 > th dose independent rect. 18 9
489 65.80 wind 1.0 10 > th dose independent rect. 21 23
490 65.80 humidity 80.0 14400 < th dose dependent rect. 5 4
496 65.82 temperature 20.0 720 > th dose dependent rect. 3 2
499 65.83 wind 1.0 10 < th dose independent rect. 17 10
504 65.84 wind 1.0 10 < th dose independent rect. 21 6
515 65.90 radiation 40.0 720 < th dose independent rect. 15 8
527 65.94 atmosphere 1015.0 720 < th dose independent rect. 3 8
539 65.97 temperature 25.0 720 > th dose independent rect. 3 6
546 66.00 humidity 70.0 14400 > th dose independent rect. 8 1
553 66.01 temperature 25.0 270 > th dose dependent rect. 18 9
569 66.06 humidity 70.0 14400 > th dose independent rect. 4 5
570 66.06 atmosphere 995.0 720 > th dose independent rect. 15 8
571 66.06 atmosphere 995.0 720 > th dose independent rect. 11 16
575 66.07 humidity 70.0 14400 > th dose independent rect. 6 3
596 66.09 atmosphere 1005.0 30 > th dose dependent rect. 20 3
607 66.12 radiation 1.0 720 < th dose independent rect. 18 9
609 66.12 atmosphere 1000.0 10 > th dose independent rect. 21 23
613 66.13 wind 1.0 10 > th dose independent rect. 23 23
615 66.13 atmosphere 1005.0 30 > th dose dependent rect. 18 5
623 66.16 humidity 70.0 14400 < th dose independent rect. 8 1
648 66.19 temperature 10.0 90 > th dose dependent rect. 3 22
649 66.19 radiation 1.0 90 < th dose dependent rect. 5 23
651 66.20 precipitation 0.1 720 < th dose independent rect. 3 8
656 66.20 precipitation 0.1 720 < th dose dependent rect. 3 8
659 66.21 wind 1.0 14400 < th dose dependent rect. 6 1
668 66.22 wind 9.0 720 < th dose independent rect. 15 8
691 66.23 precipitation 0.1 30 < th dose independent rect. 21 23
699 66.23 precipitation 0.1 30 < th dose dependent rect. 21 23
718 66.26 atmosphere 1000.0 720 > th dose independent rect. 3 6
719 66.26 radiation 1.0 90 < th dose independent rect. 5 23
745 66.30 humidity 70.0 14400 < th dose independent rect. 6 3
763 66.31 temperature 30.0 270 < th dose independent rect. 22 23
772 66.32 wind 9.0 720 < th dose independent rect. 15 6
781 66.33 temperature 30.0 720 < th dose independent rect. 15 6
788 66.34 atmosphere 1000.0 10 > th dose independent rect. 2 12
789 66.34 wind 1.0 10 > th dose independent rect. 23 21
798 66.34 radiation 1.0 720 < th dose dependent rect. 18 9
803 66.35 temperature 30.0 720 < th dose independent rect. 18 9
809 66.36 atmosphere 1000.0 10 > th dose independent rect. 14 12
813 66.37 wind 1.0 14400 < th dose independent rect. 6 1
821 66.38 humidity 90.0 720 > th dose independent rect. 3 1
823 66.38 temperature 25.0 10 > th dose independent rect. 24 20
857 66.41 wind 5.0 14400 < th dose independent rect. 11 1
872 66.42 temperature 25.0 720 > th dose dependent rect. 24 9
874 66.43 radiation 40.0 30 < th dose independent rect. 14 12
876 66.43 atmosphere 1000.0 720 > th dose independent rect. 21 18
878 66.43 temperature 20.0 30 > th dose dependent rect. 3 6
880 66.43 temperature 10.0 90 > th dose dependent rect. 3 15
881 66.44 precipitation 0.1 4320 < th dose independent rect. 20 1
884 66.44 precipitation 0.1 720 < th dose independent rect. 23 16
885 66.44 radiation 10.0 43200 < th dose dependent rect. 23 1
886 66.44 precipitation 0.1 4320 < th dose dependent rect. 20 1
888 66.44 precipitation 0.1 720 < th dose dependent rect. 23 16
893 66.45 wind 1.0 10 > th dose independent rect. 23 8
901 66.46 precipitation 0.1 4320 > th dose independent rect. 20 1
912 66.47 wind 1.0 10 > th dose independent sin 17 NA
914 66.47 humidity 50.0 720 > th dose independent rect. 15 6
919 66.47 atmosphere 995.0 720 > th dose independent rect. 3 22
965 66.48 wind 1.0 10 > th dose independent rect. 23 10
969 66.48 atmosphere 1015.0 30 < th dose independent rect. 3 23
981 66.49 atmosphere 995.0 720 > th dose independent rect. 13 2
986 66.49 humidity 60.0 10 > th dose independent rect. 14 12
989 66.49 precipitation 0.1 720 < th dose independent rect. 9 18