Os03g0313000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NADH-ubiquinone oxidoreductase (Fragment).
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Os03g0313000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NADH-ubiquinone oxidoreductase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.67 | 0.238 | 13.1 | -0.527 | 0.222 | 1.44 | 0.128 | -1.07 | -0.168 | 11.6 | 15.66 | 648 | -- | -- |
| 26.41 | 0.239 | 13.1 | -0.335 | 0.175 | 1.47 | 0.224 | -- | -0.121 | 11.4 | 14.78 | 603 | -- | -- |
| 25.64 | 0.236 | 13.1 | -0.529 | 0.201 | 1.46 | -- | -1.14 | -0.172 | 10.7 | 15.73 | 597 | -- | -- |
| 26.56 | 0.24 | 13.1 | -0.322 | 0.189 | 1.49 | -- | -- | -0.118 | 10.3 | 14.8 | 574 | -- | -- |
| 26.98 | 0.242 | 13.1 | -0.424 | -- | 1.4 | -- | -0.915 | -0.139 | -- | 15.23 | 425 | -- | -- |
| 53.06 | 0.341 | 13 | 0.0332 | 0.293 | -- | 0.456 | -- | 0.109 | 17.3 | -- | -- | -- | -- |
| 53.56 | 0.343 | 13 | 0.0325 | 0.297 | -- | -- | -- | 0.111 | 17.5 | -- | -- | -- | -- |
| 27.63 | 0.245 | 13.1 | -0.278 | -- | 1.42 | -- | -- | -0.0954 | -- | 14.21 | 407 | -- | -- |
| 29.01 | 0.251 | 13 | -- | 0.15 | 1.35 | -- | -- | -0.0628 | 10.5 | 14.76 | 529 | -- | -- |
| 58.14 | 0.356 | 13 | 0.0226 | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
| 53.59 | 0.342 | 13 | -- | 0.296 | -- | -- | -- | 0.107 | 17.5 | -- | -- | -- | -- |
| 29.51 | 0.253 | 13 | -- | -- | 1.31 | -- | -- | -0.0532 | -- | 14.75 | 397 | -- | -- |
| 58.15 | 0.356 | 13 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 7 | 23.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 45 | 24.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 51 | 24.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 61 | 25.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 73 | 25.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 119 | 25.75 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 137 | 25.93 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 145 | 25.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 230 | 26.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 304 | 26.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 346 | 27.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 359 | 27.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 422 | 27.32 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 432 | 27.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 442 | 27.38 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 500 | 27.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 14 |
| 505 | 27.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 520 | 27.55 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 747 | 27.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 848 | 27.96 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |