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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0311600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Helix-loop-helix DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.88 (0.0715) R2 : 0.485
β1 : -0.996 (0.278) R2dD : 0.0173 R2D : 5.48e-05
β2 : 2.67 (0.175) R2dC : 0.272 R2C : 0.273
β3 : 2.5 (0.476) R2dE : 0.0386 R2E : 0.094
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.41 (0.157) R2dN8 : 0.131 R2N8 : 0.108
σ : 1.32
deviance : 808.01
__
_____
C
peak time of C : 9.85
E
wheather : temperature
threshold : 20.68
memory length : 561
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
804.02 1.33 5.9 -1.08 2.64 3.14 0.619 1.68 -1.42 9.84 20.25 566 -- --
806.31 1.32 5.88 -0.958 2.64 2.88 0.994 -- -1.37 9.81 20.49 566 -- --
804.91 1.32 5.92 -1.1 2.64 3.68 -- 2.86 -1.44 9.82 19.78 557 -- --
808.01 1.32 5.88 -0.996 2.67 2.5 -- -- -1.41 9.85 20.68 561 -- --
1196.13 1.61 5.95 -0.962 -- 4.04 -- 2.85 -1.22 -- 21.82 699 -- --
855.64 1.37 5.93 -1.55 2.82 -- 0.73 -- -1.63 9.85 -- -- -- --
857.69 1.37 5.93 -1.52 2.82 -- -- -- -1.63 9.85 -- -- -- --
1204.99 1.62 5.92 -0.7 -- 3.34 -- -- -1.2 -- 22 712 -- --
830.32 1.34 5.84 -- 2.62 3.1 -- -- -1.24 9.89 20.75 569 -- --
1333.58 1.71 6 -1.55 -- -- -- -- -1.63 -- -- -- -- --
918.68 1.42 5.89 -- 2.83 -- -- -- -1.46 9.89 -- -- -- --
1216.09 1.62 5.88 -- -- 3.74 -- -- -1.08 -- 22 715 -- --
1397.06 1.74 5.96 -- -- -- -- -- -1.46 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 789.14 wind 3 43200 < th dose independent rect. 9 3
2 790.14 wind 3 43200 > th dose independent rect. 11 1
4 791.14 wind 3 43200 > th dose independent rect. 9 4
6 791.51 wind 3 43200 < th dose independent rect. 11 1
7 791.60 wind 1 14400 > th dose independent rect. 1 1
9 792.40 wind 3 43200 > th dose independent rect. 15 21
10 792.48 atmosphere 995 43200 < th dose dependent rect. 13 12
11 792.49 atmosphere 995 43200 < th dose independent rect. 16 23
12 792.59 atmosphere 995 43200 > th dose independent rect. 17 22
13 792.64 wind 3 43200 > th dose dependent rect. 3 17
16 792.71 wind 3 43200 > th dose independent rect. 18 21
17 792.76 wind 5 43200 < th dose dependent rect. 11 1
35 793.07 wind 3 43200 < th dose independent rect. 15 21
43 793.23 wind 3 43200 > th dose independent rect. 6 9
53 793.35 atmosphere 995 43200 > th dose independent rect. 21 19
54 793.35 atmosphere 995 43200 < th dose independent rect. 21 20
62 793.42 wind 3 43200 < th dose independent rect. 18 21
65 793.45 wind 3 43200 > th dose independent sin 2 NA
67 793.46 wind 3 43200 > th dose dependent rect. 23 21
70 793.48 wind 5 43200 < th dose dependent rect. 9 5
74 793.55 wind 3 43200 < th dose independent rect. 8 6
86 793.62 wind 3 43200 > th dose independent rect. 4 12
88 793.64 wind 1 43200 > th dose dependent rect. 21 22
97 793.69 wind 3 43200 < th dose dependent rect. 9 3
113 793.82 wind 1 43200 > th dose dependent rect. 18 23
118 793.88 temperature 20 720 < th dose independent rect. 24 4
120 793.91 wind 1 43200 > th dose dependent rect. 14 22
126 793.94 wind 9 43200 < th dose dependent rect. 21 22
128 793.95 wind 7 43200 < th dose dependent rect. 18 23
136 794.01 wind 3 43200 > th dose independent rect. 17 14
139 794.02 wind 3 43200 > th dose independent sin 12 NA
148 794.07 wind 1 43200 > th dose dependent rect. 1 23
154 794.11 wind 3 43200 > th dose independent rect. 3 14
162 794.13 wind 3 43200 < th dose independent rect. 5 10
172 794.16 wind 3 43200 > th dose independent rect. 2 22
175 794.17 wind 3 43200 < th dose independent sin 2 NA
179 794.17 wind 1 43200 > th dose dependent no NA NA
184 794.18 wind 7 43200 < th dose dependent rect. 14 22
189 794.19 wind 1 43200 > th dose dependent rect. 9 23
223 794.28 wind 3 43200 > th dose independent no NA NA
235 794.31 wind 1 43200 > th dose dependent sin 1 NA
250 794.36 wind 7 43200 < th dose dependent rect. 1 23
252 794.37 wind 3 43200 < th dose independent rect. 4 12
278 794.47 wind 9 43200 < th dose dependent no NA NA
280 794.47 wind 9 43200 < th dose dependent rect. 8 23
291 794.50 wind 5 43200 < th dose independent rect. 3 17
296 794.51 wind 9 43200 < th dose dependent rect. 11 3
301 794.52 wind 3 43200 > th dose independent rect. 9 1
310 794.53 wind 1 43200 > th dose dependent rect. 5 23
318 794.55 wind 9 43200 < th dose dependent rect. 1 19
335 794.58 wind 7 43200 < th dose dependent sin 1 NA
341 794.59 wind 3 43200 < th dose independent sin 12 NA
360 794.63 wind 7 43200 < th dose independent rect. 17 1
380 794.66 wind 3 43200 > th dose dependent rect. 11 21
396 794.70 wind 7 43200 < th dose dependent rect. 4 13
409 794.73 wind 3 43200 < th dose independent rect. 17 14
411 794.73 wind 1 43200 > th dose dependent rect. 11 3
436 794.77 wind 5 43200 < th dose dependent rect. 6 9
442 794.78 wind 3 43200 > th dose dependent rect. 15 17
474 794.85 wind 9 43200 < th dose dependent rect. 5 23
476 794.87 wind 3 43200 > th dose independent rect. 18 11
493 794.90 wind 3 43200 > th dose independent rect. 7 23
508 794.94 wind 3 14400 < th dose dependent rect. 3 1
549 795.03 wind 3 43200 < th dose independent rect. 2 22
573 795.08 humidity 80 14400 < th dose dependent rect. 6 1
582 795.10 wind 7 43200 > th dose independent rect. 16 2
593 795.12 wind 3 43200 < th dose independent no NA NA
694 795.33 wind 3 43200 < th dose independent rect. 18 11
775 795.52 wind 9 43200 < th dose dependent rect. 16 15
837 795.68 atmosphere 995 43200 < th dose independent no NA NA
839 795.68 atmosphere 995 43200 < th dose independent rect. 7 23
862 795.73 wind 3 43200 < th dose independent rect. 6 23
906 795.81 wind 1 43200 > th dose dependent sin 12 NA
910 795.82 wind 1 43200 > th dose dependent rect. 9 6
919 795.84 atmosphere 995 43200 < th dose independent rect. 1 23
929 795.86 wind 7 43200 < th dose dependent sin 12 NA