BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0311600 Os03g0311600|AK103709
         (205 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09250.1  | chr1:2989509-2990132 FORWARD LENGTH=208             94   4e-20
AT3G05800.1  | chr3:1727476-1728111 FORWARD LENGTH=212             88   3e-18
AT3G06590.1  | chr3:2054647-2055312 REVERSE LENGTH=222             87   9e-18
AT3G17100.1  | chr3:5831552-5832244 FORWARD LENGTH=231             86   1e-17

>AT1G09250.1 | chr1:2989509-2990132 FORWARD LENGTH=208
          Length = 207

 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 83/182 (45%), Gaps = 13/182 (7%)

Query: 10  AVEERGNSERKRKR--GATGESE-----GSEAQPSKWRTRRAHEIYSSKLLDAIRLVXXX 62
           ++E  G S R++K     T E+E      +E    +W+T R  +IY+ KL++A+R V   
Sbjct: 8   SIENTGESSRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQR 67

Query: 63  XXXXXXXXXXXXXX-----XXXXXDRALAVSARGRTRWSRAILXXXXXXXXXXXXXXXXX 117
                                   DR LA SARG TRWSRAIL                 
Sbjct: 68  SSTTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKLKKHRKAKKS 127

Query: 118 XIXXXXXXXXXXXXXXXXXXXLARKAKVLGRLVPGCRKLPFPALLAEASDYIAALEMQVR 177
                                + RK K+LGRLVPGCRK+  P LL EA+DYIAALEMQVR
Sbjct: 128 T-GNCKSRKGLTETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVR 186

Query: 178 AM 179
           AM
Sbjct: 187 AM 188



>AT3G05800.1 | chr3:1727476-1728111 FORWARD LENGTH=212
          Length = 211

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 69/150 (46%), Gaps = 12/150 (8%)

Query: 38  KWRTRRAHEIYSSKLLDAIRLVXXXXXXXXXXXXXXXXXXXXXXDRALAVSARGRTRWSR 97
           +WR   A ++YS KL DA++                        D+ LA +ARG TRWSR
Sbjct: 62  RWRATTAQKVYSLKLYDALQ------------RSRRSATVRDTADKVLATTARGATRWSR 109

Query: 98  AILXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXLARKAKVLGRLVPGCRKLP 157
           AIL                                      +  + +VLG LVPGCR+  
Sbjct: 110 AILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRRKLSAVGNRVRVLGGLVPGCRRTA 169

Query: 158 FPALLAEASDYIAALEMQVRAMTALAEVLS 187
            P LL E +DYIAALEMQVRAMTAL+++LS
Sbjct: 170 LPELLDETADYIAALEMQVRAMTALSKILS 199



>AT3G06590.1 | chr3:2054647-2055312 REVERSE LENGTH=222
          Length = 221

 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 73/168 (43%), Gaps = 16/168 (9%)

Query: 37  SKWRTRRAHEIYSSKLLDA---IRLVXXXXXXXXXXXXXXXXXXXXXXDRALAVSARGRT 93
           ++WR+ +   IYS+KL  A   +RL                       DRALAVSARGRT
Sbjct: 46  ARWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRT 105

Query: 94  RWSRAILXX-------------XXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXLA 140
            WSRAIL                                                   + 
Sbjct: 106 LWSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVN 165

Query: 141 RKAKVLGRLVPGCRKLPFPALLAEASDYIAALEMQVRAMTALAEVLST 188
           RK +VLGRLVPGC K   P +L EA+DYI ALEMQVRAM +L ++LS+
Sbjct: 166 RKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLSS 213



>AT3G17100.1 | chr3:5831552-5832244 FORWARD LENGTH=231
          Length = 230

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 70/158 (44%), Gaps = 13/158 (8%)

Query: 38  KWRTRRAHEIYSSKLLDAIRLVXXXXXXXXXXXXXXXX---XXXXXXDRALAVSARGRTR 94
           KWR+ +  +IYS+KL+ A+R +                         DRALAV+ARG+T 
Sbjct: 49  KWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTL 108

Query: 95  WSRAILXXXXXXXXXXXXXXXXXX----------IXXXXXXXXXXXXXXXXXXXLARKAK 144
           WSRAIL                            I                   + RK K
Sbjct: 109 WSRAILSKAVKLKFRKHKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVK 168

Query: 145 VLGRLVPGCRKLPFPALLAEASDYIAALEMQVRAMTAL 182
           VL RLVPGCRK   P +L E +DYIAA+EMQ+R MTA+
Sbjct: 169 VLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAI 206



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.127    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,212,663
Number of extensions: 52174
Number of successful extensions: 358
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 7
Length of query: 205
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 111
Effective length of database: 8,529,465
Effective search space: 946770615
Effective search space used: 946770615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)