Os03g0310800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hypersensitive reaction associated Ca2+-binding protein.
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Os03g0310800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hypersensitive reaction associated Ca2+-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.73 | 0.584 | 14.1 | -0.112 | 3.46 | -1.15 | 1.71 | 0.446 | -0.405 | 8.5 | 12.12 | 10 | -- | -- |
| 155.27 | 0.58 | 14.1 | -0.108 | 3.46 | -1.16 | 1.29 | -- | -0.407 | 8.48 | 11.88 | 10 | -- | -- |
| 158.01 | 0.59 | 14.1 | -0.0901 | 3.49 | -1.09 | -- | -0.46 | -0.388 | 8.57 | 12.29 | 19 | -- | -- |
| 159.23 | 0.592 | 14.1 | -0.0764 | 3.48 | -1.11 | -- | -- | -0.387 | 8.55 | 12.29 | 19 | -- | -- |
| 521.65 | 1.06 | 14.2 | -0.0549 | -- | -2.77 | -- | -0.274 | -0.451 | -- | 5.988 | 2 | -- | -- |
| 175.96 | 0.622 | 14.1 | -0.106 | 4.39 | -- | 1.11 | -- | -0.375 | 9.35 | -- | -- | -- | -- |
| 180.44 | 0.629 | 14.1 | -0.0656 | 4.38 | -- | -- | -- | -0.373 | 9.35 | -- | -- | -- | -- |
| 522.1 | 1.06 | 14.2 | -0.0532 | -- | -2.78 | -- | -- | -0.451 | -- | 6.004 | 2 | -- | -- |
| 159.39 | 0.591 | 14.1 | -- | 3.48 | -1.11 | -- | -- | -0.378 | 8.56 | 12.29 | 19 | -- | -- |
| 1303.67 | 1.69 | 14.2 | -0.0882 | -- | -- | -- | -- | -0.356 | -- | -- | -- | -- | -- |
| 180.56 | 0.629 | 14.1 | -- | 4.38 | -- | -- | -- | -0.366 | 9.35 | -- | -- | -- | -- |
| 522.18 | 1.06 | 14.2 | -- | -- | -2.78 | -- | -- | -0.445 | -- | 6.01 | 2 | -- | -- |
| 1303.88 | 1.69 | 14.2 | -- | -- | -- | -- | -- | -0.347 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.04 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 13 |
| 3 | 146.38 | humidity | 50 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 8 | 147.65 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 10 | 147.71 | radiation | 10 | 10 | < th | dose dependent | sin | 19 | NA |
| 24 | 148.80 | radiation | 10 | 90 | < th | dose dependent | rect. | 11 | 9 |
| 35 | 149.18 | radiation | 1 | 90 | < th | dose independent | rect. | 6 | 14 |
| 62 | 149.99 | radiation | 10 | 10 | > th | dose independent | sin | 17 | NA |
| 71 | 150.15 | radiation | 1 | 30 | > th | dose independent | sin | 22 | NA |
| 91 | 150.74 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 98 | 150.85 | radiation | 1 | 30 | < th | dose independent | rect. | 11 | 9 |
| 105 | 150.94 | radiation | 1 | 30 | < th | dose independent | rect. | 13 | 7 |
| 107 | 150.97 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 108 | 150.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 118 | 151.10 | temperature | 30 | 10 | < th | dose independent | rect. | 7 | 13 |
| 136 | 151.23 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 6 |
| 145 | 151.49 | radiation | 1 | 30 | < th | dose independent | sin | 22 | NA |
| 147 | 151.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 8 |
| 163 | 151.63 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 177 | 151.75 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 186 | 151.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 194 | 151.89 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 3 |
| 230 | 152.17 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 5 |
| 232 | 152.18 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 5 |
| 263 | 152.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 268 | 152.48 | radiation | 10 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 272 | 152.50 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 10 |
| 301 | 152.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 14 |
| 308 | 152.83 | radiation | 10 | 10 | > th | dose independent | rect. | 12 | 19 |
| 319 | 152.89 | humidity | 80 | 10 | < th | dose dependent | rect. | 12 | 6 |
| 324 | 152.93 | radiation | 10 | 10 | > th | dose independent | rect. | 12 | 6 |
| 406 | 153.47 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 16 |
| 414 | 153.55 | radiation | 10 | 10 | < th | dose independent | sin | 17 | NA |
| 422 | 153.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 432 | 153.73 | radiation | 20 | 30 | < th | dose dependent | rect. | 7 | 21 |
| 444 | 153.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 450 | 153.89 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 10 |
| 478 | 154.16 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 11 |
| 489 | 154.20 | radiation | 10 | 90 | < th | dose independent | sin | 18 | NA |
| 492 | 154.23 | humidity | 80 | 10 | > th | dose independent | rect. | 7 | 13 |
| 494 | 154.24 | radiation | 1 | 30 | > th | dose dependent | sin | 15 | NA |
| 505 | 154.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 22 | 20 |
| 509 | 154.34 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 517 | 154.39 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 520 | 154.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 525 | 154.43 | humidity | 50 | 30 | > th | dose dependent | rect. | 15 | 5 |
| 526 | 154.44 | humidity | 80 | 10 | < th | dose independent | rect. | 12 | 6 |
| 538 | 154.52 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 540 | 154.53 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 17 |
| 552 | 154.59 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 15 |
| 554 | 154.60 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 10 | 17 |
| 556 | 154.61 | radiation | 10 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 558 | 154.62 | temperature | 25 | 10 | > th | dose dependent | sin | 21 | NA |
| 560 | 154.63 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 9 | 19 |
| 564 | 154.65 | radiation | 10 | 90 | > th | dose independent | rect. | 11 | 20 |
| 592 | 154.76 | radiation | 10 | 90 | > th | dose independent | rect. | 11 | 7 |
| 610 | 154.79 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 9 | 20 |
| 612 | 154.80 | atmosphere | 995 | 43200 | > th | dose independent | sin | 18 | NA |
| 619 | 154.82 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 22 |
| 622 | 154.83 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 637 | 154.87 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 641 | 154.89 | atmosphere | 995 | 43200 | < th | dose independent | sin | 18 | NA |
| 655 | 154.95 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 691 | 155.09 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 22 |
| 699 | 155.10 | atmosphere | 995 | 43200 | > th | dose independent | no | NA | NA |
| 704 | 155.11 | humidity | 80 | 30 | > th | dose independent | rect. | 13 | 7 |
| 718 | 155.15 | humidity | 60 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 765 | 155.24 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 777 | 155.25 | radiation | 20 | 10 | < th | dose dependent | rect. | 18 | 23 |
| 810 | 155.33 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 821 | 155.35 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 825 | 155.36 | temperature | 25 | 90 | > th | dose independent | rect. | 11 | 7 |
| 881 | 155.53 | atmosphere | 995 | 90 | > th | dose independent | rect. | 7 | 13 |
| 886 | 155.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 4 |
| 959 | 155.82 | atmosphere | 995 | 43200 | < th | dose independent | no | NA | NA |
| 960 | 155.82 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 22 |