Os03g0310500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CAP protein family protein.
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Os03g0310500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CAP protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.42 | 0.232 | 11 | 0.0855 | 0.193 | 0.286 | 0.382 | -0.285 | -0.0304 | 13.8 | 24.7 | 766 | -- | -- |
| 24.57 | 0.231 | 11 | 0.0278 | 0.203 | 0.276 | 0.364 | -- | -0.0475 | 13.8 | 24.5 | 736 | -- | -- |
| 24.96 | 0.233 | 11 | 0.079 | 0.208 | 0.276 | -- | -0.231 | -0.0298 | 13.8 | 24.59 | 753 | -- | -- |
| 24.98 | 0.233 | 11 | 0.0101 | 0.206 | 0.266 | -- | -- | -0.0551 | 13.8 | 24.56 | 730 | -- | -- |
| 26.91 | 0.242 | 11 | 0.084 | -- | 0.352 | -- | -0.229 | -0.0189 | -- | 24.8 | 826 | -- | -- |
| 27.29 | 0.245 | 11 | -0.0906 | 0.27 | -- | 0.311 | -- | -0.162 | 12.5 | -- | -- | -- | -- |
| 27.7 | 0.246 | 11 | -0.0789 | 0.269 | -- | -- | -- | -0.16 | 12.5 | -- | -- | -- | -- |
| 27.02 | 0.242 | 11 | 0.0285 | -- | 0.351 | -- | -- | -0.0328 | -- | 24.76 | 855 | -- | -- |
| 24.99 | 0.233 | 11 | -- | 0.205 | 0.265 | -- | -- | -0.0573 | 13.8 | 24.59 | 731 | -- | -- |
| 32.25 | 0.265 | 11 | -0.0881 | -- | -- | -- | -- | -0.165 | -- | -- | -- | -- | -- |
| 27.87 | 0.247 | 11 | -- | 0.27 | -- | -- | -- | -0.152 | 12.5 | -- | -- | -- | -- |
| 27.04 | 0.242 | 11 | -- | -- | 0.342 | -- | -- | -0.0388 | -- | 24.7 | 832 | -- | -- |
| 32.46 | 0.266 | 11 | -- | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.69 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 2 | 22.81 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 5 | 23.19 | humidity | 80.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 8 | 23.39 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 12 | 23.45 | temperature | 25.0 | 720 | < th | dose independent | rect. | 13 | 17 |
| 15 | 23.47 | temperature | 25.0 | 720 | > th | dose independent | rect. | 14 | 12 |
| 45 | 23.59 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 48 | 23.62 | temperature | 25.0 | 720 | < th | dose independent | sin | 16 | NA |
| 52 | 23.62 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 80 | 23.70 | temperature | 25.0 | 720 | < th | dose independent | rect. | 14 | 12 |
| 87 | 23.73 | temperature | 25.0 | 720 | > th | dose independent | sin | 16 | NA |
| 100 | 23.75 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 4 | 8 |
| 124 | 23.79 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 127 | 23.79 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 158 | 23.82 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 13 |
| 172 | 23.84 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 8 |
| 192 | 23.86 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 200 | 23.86 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 233 | 23.91 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 249 | 23.93 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 260 | 23.94 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 270 | 23.95 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 23 | 13 |
| 291 | 23.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 306 | 23.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 309 | 23.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 359 | 24.02 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 429 | 24.08 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 441 | 24.08 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 458 | 24.10 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 5 | NA |
| 464 | 24.11 | wind | 1.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 465 | 24.11 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 616 | 24.19 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 727 | 24.24 | wind | 1.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 733 | 24.24 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 735 | 24.24 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 771 | 24.27 | humidity | 70.0 | 4320 | < th | dose independent | sin | 6 | NA |
| 803 | 24.28 | humidity | 80.0 | 4320 | > th | dose independent | sin | 5 | NA |
| 863 | 24.31 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 887 | 24.32 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 905 | 24.33 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 916 | 24.34 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 922 | 24.34 | temperature | 25.0 | 270 | < th | dose dependent | sin | 13 | NA |
| 923 | 24.34 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 931 | 24.35 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 943 | 24.35 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |