BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0310500 Os03g0310500|AK068123
(334 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G16180.2 | chr4:9165365-9170323 REVERSE LENGTH=821 460 e-130
AT3G28720.1 | chr3:10782276-10784339 FORWARD LENGTH=688 51 1e-06
>AT4G16180.2 | chr4:9165365-9170323 REVERSE LENGTH=821
Length = 820
Score = 460 bits (1184), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/334 (67%), Positives = 261/334 (78%), Gaps = 3/334 (0%)
Query: 2 NEQDDTHDSI-KHKPIWESYMPRNXXXXXXXXXXXXXDLYRTYGTRVIPVFVLSLADVDA 60
+E + + DSI KH+P+W SY + DLYRTYGTRVIPVF+LSLADVD
Sbjct: 484 DESEGSSDSIVKHRPLWSSYSSKLQKGKKKKAVKKKGDLYRTYGTRVIPVFILSLADVDP 543
Query: 61 ELLMEEENLVWTSKDVVIVLEHNNEKVPLSYVSETTRQFAFPSLAQRHIXXXXXXXXXXX 120
L+ME+E+LVW S DVVIVL+H NEK+PLSYVSET RQ A PS QRH+
Sbjct: 544 MLMMEDESLVWASSDVVIVLQHLNEKIPLSYVSETERQHAVPSQVQRHVLAGIASALGGV 603
Query: 121 XXPYERASHIHERPVVNWLWAAGCHPFGPFSNSSKISQILQDVALRTTIYAQVDAALHKI 180
PYE+ SH HERP+ NWLWAAGCHPFGPFSN S ISQ+LQDVALR TIYA+VD+AL KI
Sbjct: 604 SAPYEKTSHAHERPITNWLWAAGCHPFGPFSNVSLISQMLQDVALRNTIYARVDSALRKI 663
Query: 181 RDTSEFVQSFASEHLKTPLGEPVKGKQNKSNTELWVEKFYKKVTTMPEPFPHELVERLEE 240
R+TSE VQ+FASE+LKTPLGEPVK K+NK+ TELWVEKFYKK TT+PEPFPHELVERLE+
Sbjct: 664 RETSEAVQNFASEYLKTPLGEPVKDKKNKTKTELWVEKFYKKTTTLPEPFPHELVERLEK 723
Query: 241 YLDRLEGQLVDLSSLLYDHRLVDAYQNSSDILQSTIFTQQYVERVLSAERDKMKCCTIEY 300
YLD +E QLVDLSSLLYDH+L DA+ NSS+ILQ+T+FTQQYVE VL ER+ M+CC IEY
Sbjct: 724 YLDTVEEQLVDLSSLLYDHKLYDAHLNSSEILQTTMFTQQYVEHVLETERENMRCCKIEY 783
Query: 301 NHP--KQSSQAFVYGGILLAGFLVYSLVIFFSSP 332
+ +S Q VYGGIL+AGFLVY LVIFFSSP
Sbjct: 784 KYTVGVKSYQTLVYGGILVAGFLVYFLVIFFSSP 817
>AT3G28720.1 | chr3:10782276-10784339 FORWARD LENGTH=688
Length = 687
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 9/164 (5%)
Query: 46 RVIPVFVLSLADVDAELLMEEENLVWTSKDVVIVLEHNNEKVPLSYVSETTRQFAFPSLA 105
RV+PV+V L D++ LL++ + +D+VI + + Y F
Sbjct: 433 RVLPVYVFDL-DINTPLLLDRYHQSVAFRDMVIAVRTRGTQTVSDYTCNGRHVFVHTRDL 491
Query: 106 QRHIXXXXXXXXXXXXXPYERASHIHERPVVNWLWAAGCHPFGPFSNSSKISQILQDVAL 165
+R + + S H +V++ W+ G PFGPFS+ S +S + +D A
Sbjct: 492 ERPLVGSILQSMWGVSSTHLTWSPRHNTTLVDYTWSIGQTPFGPFSDISSLSFVQKDAAK 551
Query: 166 RTTIYAQVDAALHKIRDTSEFVQSFASEHLKTPLGEPVKGKQNK 209
R I ++ + D + ++ G+ + KQN+
Sbjct: 552 RNVILTSLNTTITSAIDVIDSAVAYG--------GDVILRKQNR 587
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,691,292
Number of extensions: 246908
Number of successful extensions: 630
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 628
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,392,385
Effective search space: 1972210475
Effective search space used: 1972210475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)