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Os03g0305200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.15 (0.0393) R2 : 0.686
β1 : 1.03 (0.155) R2dD : 0.0387 R2D : 0.0898
β2 : 2.48 (0.0921) R2dC : 0.52 R2C : 0.475
β3 : 0.785 (0.122) R2dE : 0.0348 R2E : 0.0209
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.76 (0.349) R2dD*E : 0.0577 R2D*E : 0.12
γ1 : -0.0813 (0.0854) R2dN8 : 0.000927 R2N8 : -0.00576
σ : 0.712
deviance : 233.82
__
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C
peak time of C : 24
E
wheather : temperature
threshold : 20.42
memory length : 194
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.15 0.716 9.15 0.974 2.47 0.766 -0.661 -2.95 -0.0892 24 20.4 189 -- --
259.68 0.751 9.09 1.37 2.39 1.35 0.0378 -- 0.0097 0.075 19.5 362 -- --
233.82 0.712 9.15 1.03 2.48 0.785 -- -2.76 -0.0813 24 20.42 194 -- --
259.57 0.75 9.09 1.33 2.38 1.38 -- -- -0.00727 0.108 19.51 363 -- --
553.46 1.1 9.11 0.735 -- 1.34 -- -2.62 -0.222 -- 21.3 789 -- --
302.96 0.816 9.04 1.81 2.35 -- 0.192 -- 0.218 23.9 -- -- -- --
303.12 0.815 9.04 1.8 2.35 -- -- -- 0.217 23.9 -- -- -- --
560.14 1.1 9.04 1.05 -- 1.95 -- -- -0.108 -- 19.5 810 -- --
271.37 0.767 9.16 -- 2.22 2.29 -- -- -0.212 23.9 19.3 3319 -- --
651.78 1.19 8.99 1.87 -- -- -- -- 0.248 -- -- -- -- --
388.36 0.922 9.09 -- 2.38 -- -- -- 0.0169 23.9 -- -- -- --
587.62 1.13 9.05 -- -- 2.42 -- -- -0.186 -- 19.6 845 -- --
743.91 1.27 9.04 -- -- -- -- -- 0.0406 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 234.00 temperature 20 270 > th dose independent rect. 8 23
3 234.64 temperature 20 270 > th dose independent rect. 16 22
4 234.90 temperature 20 270 > th dose independent rect. 22 23
6 235.23 humidity 90 14400 < th dose independent rect. 5 2
7 235.28 wind 1 43200 > th dose independent rect. 5 19
8 235.28 wind 9 14400 > th dose dependent rect. 23 2
9 235.39 wind 9 14400 > th dose independent rect. 23 2
18 235.71 wind 1 43200 > th dose independent rect. 6 6
19 235.86 wind 1 43200 > th dose independent rect. 6 8
21 235.92 radiation 10 4320 < th dose dependent rect. 22 7
28 236.15 wind 1 43200 < th dose independent rect. 8 7
33 236.37 temperature 10 43200 > th dose independent rect. 9 9
35 236.44 wind 9 14400 < th dose independent rect. 19 8
39 236.51 wind 9 14400 < th dose independent rect. 19 6
48 236.66 wind 1 43200 < th dose dependent rect. 8 6
49 236.67 temperature 20 270 < th dose independent rect. 9 22
61 237.01 humidity 90 14400 > th dose independent rect. 5 2
64 237.11 wind 7 14400 > th dose dependent rect. 19 1
65 237.13 wind 9 14400 > th dose independent rect. 19 6
69 237.18 temperature 20 270 < th dose independent rect. 18 22
74 237.24 wind 1 43200 < th dose independent rect. 6 19
75 237.25 wind 9 14400 < th dose independent rect. 23 1
76 237.26 humidity 80 14400 > th dose dependent rect. 5 2
78 237.28 wind 9 14400 < th dose independent rect. 19 2
79 237.32 temperature 20 4320 < th dose independent rect. 9 1
81 237.36 wind 9 14400 < th dose independent rect. 23 4
98 237.65 temperature 10 43200 > th dose independent rect. 9 4
114 237.93 wind 3 43200 < th dose dependent rect. 6 13
116 237.94 wind 7 14400 > th dose dependent rect. 19 6
118 237.96 wind 1 43200 > th dose independent sin 22 NA
166 238.36 wind 9 14400 > th dose independent rect. 19 2
174 238.40 wind 5 14400 > th dose dependent rect. 21 2
185 238.55 temperature 20 4320 > th dose independent rect. 18 2
189 238.56 temperature 20 270 > th dose independent no NA NA
195 238.61 wind 9 43200 > th dose independent rect. 16 17
209 238.71 temperature 20 4320 > th dose independent rect. 9 1
223 238.79 temperature 20 270 < th dose independent no NA NA
240 238.94 temperature 20 270 < th dose independent rect. 13 23
249 239.00 wind 3 43200 < th dose dependent sin 22 NA
268 239.08 wind 7 43200 > th dose dependent rect. 16 17
292 239.28 wind 3 43200 < th dose dependent rect. 13 1
313 239.40 wind 7 14400 < th dose independent rect. 21 1
320 239.42 temperature 20 270 < th dose independent rect. 11 23
326 239.45 temperature 20 4320 < th dose independent rect. 18 1
337 239.52 wind 9 14400 > th dose dependent rect. 23 5
341 239.54 wind 7 14400 < th dose independent rect. 17 18
349 239.56 temperature 20 270 < th dose independent rect. 3 23
368 239.65 wind 3 43200 < th dose dependent rect. 13 3
369 239.66 wind 1 43200 < th dose independent sin 22 NA
377 239.70 wind 1 43200 > th dose independent rect. 8 2
379 239.71 wind 1 43200 > th dose independent rect. 12 2
403 239.84 wind 3 43200 < th dose dependent rect. 13 11
408 239.86 humidity 50 43200 > th dose dependent rect. 21 4
410 239.87 humidity 90 43200 < th dose dependent rect. 23 2
418 239.90 wind 5 14400 > th dose dependent rect. 9 1
420 239.90 wind 3 43200 < th dose dependent rect. 12 5
445 240.02 humidity 90 14400 > th dose dependent rect. 4 11
447 240.03 wind 3 43200 < th dose dependent rect. 13 13
453 240.06 humidity 50 43200 > th dose dependent rect. 20 7
459 240.09 temperature 15 4320 > th dose independent rect. 3 6
472 240.12 humidity 90 14400 > th dose dependent rect. 12 2
477 240.14 humidity 60 43200 > th dose dependent rect. 23 1
526 240.30 temperature 20 30 < th dose independent rect. 9 22
559 240.39 wind 3 43200 > th dose independent rect. 15 12
564 240.41 wind 3 43200 < th dose independent rect. 14 13
571 240.42 humidity 50 43200 < th dose dependent rect. 8 1
599 240.52 temperature 20 30 < th dose independent rect. 13 23
605 240.54 wind 3 43200 > th dose independent rect. 14 18
619 240.56 temperature 20 30 < th dose independent rect. 18 22
643 240.61 temperature 20 30 < th dose independent rect. 21 23
678 240.70 temperature 20 30 < th dose independent no NA NA
682 240.70 temperature 20 30 < th dose independent rect. 23 23
692 240.72 temperature 20 30 < th dose independent rect. 3 23
703 240.74 humidity 90 14400 > th dose independent rect. 24 16
711 240.75 temperature 20 30 < th dose independent rect. 15 23
722 240.77 wind 3 43200 < th dose independent rect. 13 19
723 240.77 temperature 20 30 < th dose independent rect. 5 23
732 240.78 radiation 10 4320 > th dose dependent rect. 6 1
740 240.80 wind 3 43200 < th dose independent rect. 13 22
741 240.80 temperature 20 30 < th dose independent rect. 11 23
749 240.82 wind 1 14400 > th dose independent rect. 23 3
765 240.85 wind 7 14400 > th dose independent rect. 21 1
791 240.91 temperature 20 30 < th dose independent rect. 1 23
799 240.93 wind 3 43200 > th dose independent sin 14 NA
865 241.05 humidity 90 14400 < th dose independent rect. 23 17
869 241.06 wind 3 43200 < th dose independent sin 15 NA
870 241.06 wind 9 14400 > th dose independent rect. 23 5
884 241.08 wind 9 43200 > th dose dependent rect. 18 14
918 241.17 wind 9 43200 > th dose dependent sin 12 NA
929 241.19 wind 3 43200 < th dose dependent rect. 13 22
950 241.23 wind 7 14400 < th dose independent sin 11 NA
962 241.25 humidity 80 43200 > th dose independent rect. 23 13
964 241.25 humidity 80 43200 < th dose dependent rect. 19 15
966 241.26 wind 7 14400 > th dose independent sin 11 NA
998 241.33 radiation 20 4320 < th dose independent rect. 17 10