BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0305200 Os03g0305200|AK108450
         (209 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02090.1  | chr4:923122-923730 FORWARD LENGTH=203               64   7e-11

>AT4G02090.1 | chr4:923122-923730 FORWARD LENGTH=203
          Length = 202

 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 21/188 (11%)

Query: 23  DGSVRALSEPVSVAELMMDHPRHFVIDARDLQQQRRHXXXXXXXXXXXXXXXXXXXDHVL 82
           DG V+ L E  +VAE+M+++P+H V++                             D  L
Sbjct: 24  DGRVQNLEEETTVAEIMLENPQHVVVEF-----DPSSISFNNDAKTVKRKLAPLPADKTL 78

Query: 83  GAGGVYVLLPATTRGKVSAEEARRALTASRSLERSRSMPGRLRRKLSSKK------MTQE 136
             G +Y++LPA   G  +A+ +   LT+    +   S    +R   S  +       T+ 
Sbjct: 79  EPGKIYLVLPAKRSGGRAAKSSSAVLTSEEMRKMLFSATAMVRSSFSYYEGILPWFTTRS 138

Query: 137 ADNDGNASENHXXXXXXXXXXXXXXXXXXXXXDGFEEHRPEFLSRELSSRGWKPSLITIE 196
             N+  A++                          EE RPEFLSR+LS RGWKPSL  I 
Sbjct: 139 YKNNNPATDTVVAATSVGRLEAEME----------EEDRPEFLSRQLSGRGWKPSLDPIR 188

Query: 197 ERVAPKKV 204
           E+ A KK+
Sbjct: 189 EKKAKKKI 196



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,943,983
Number of extensions: 77143
Number of successful extensions: 277
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 115
Effective length of database: 8,529,465
Effective search space: 980888475
Effective search space used: 980888475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)