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Os03g0300300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.58 (0.0279) R2 : 0.757
β1 : 1.12 (0.102) R2dD : 0.0673 R2D : 0.0336
β2 : 1.68 (0.0813) R2dC : 0.308 R2C : 0.523
β3 : -1.34 (0.0882) R2dE : 0.171 R2E : 0.375
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.426 (0.0603) R2dN8 : 0.0369 R2N8 : -0.0141
σ : 0.521
deviance : 125.03
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_____
C
peak time of C : 15.4
E
wheather : temperature
threshold : 6.326
memory length : 29
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.78
open length of G : 5.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
125.29 0.526 8.58 1.13 1.71 -1.34 0.0937 0.0667 0.437 15.4 8.333 23 3.85 5.13
125.13 0.521 8.58 1.13 1.69 -1.34 0.052 -- 0.429 15.4 6.874 25 3.83 5.15
125.12 0.521 8.58 1.14 1.68 -1.36 -- 0.079 0.43 15.4 6.71 26 3.81 5.15
125.03 0.521 8.58 1.12 1.68 -1.34 -- -- 0.426 15.4 6.326 29 3.78 5.2
231.44 0.709 8.57 1.09 -- -2.01 -- -0.289 0.391 -- 0.2956 16 3.63 6.1
166.63 0.605 8.63 1.06 2.45 -- 0.306 -- 0.278 16.4 -- -- -- --
166.88 0.605 8.63 1.06 2.45 -- -- -- 0.28 16.4 -- -- -- --
222.17 0.694 8.58 1.23 -- -2.21 -- -- 0.424 -- 5.408 100 2.48 5.98
158.42 0.586 8.6 -- 1.68 -1.29 -- -- 0.312 15.5 6.814 35 3.75 5.52
488.81 1.03 8.62 0.968 -- -- -- -- 0.215 -- -- -- -- --
196.77 0.656 8.66 -- 2.43 -- -- -- 0.161 16.4 -- -- -- --
255.54 0.745 8.6 -- -- -2.12 -- -- 0.344 -- 4.381 93 2.37 6.15
513.53 1.06 8.64 -- -- -- -- -- 0.108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 126.91 radiation 30.0 90 < th dose independent rect. 3 6
2 128.01 wind 5.0 90 < th dose independent rect. 3 6
3 128.14 temperature 10.0 10 > th dose dependent rect. 4 5
4 128.42 wind 5.0 10 < th dose independent rect. 4 5
6 128.88 atmosphere 995.0 10 > th dose independent rect. 9 19
12 129.19 temperature 10.0 10 > th dose independent rect. 4 5
14 129.19 temperature 30.0 10 < th dose independent rect. 4 5
15 129.19 humidity 50.0 10 > th dose independent rect. 4 5
17 129.19 atmosphere 995.0 10 > th dose independent rect. 4 5
18 129.19 atmosphere 1015.0 10 < th dose independent rect. 4 5
19 129.19 wind 9.0 10 < th dose independent rect. 9 19
20 129.19 temperature 10.0 10 > th dose independent rect. 9 19
21 129.20 precipitation 0.1 10 < th dose independent rect. 4 5
22 129.20 precipitation 0.1 10 < th dose dependent rect. 4 5
23 129.30 temperature 30.0 90 < th dose independent rect. 3 6
24 129.35 atmosphere 1000.0 270 > th dose independent rect. 18 9
29 129.60 temperature 10.0 270 > th dose dependent rect. 3 3
44 129.95 wind 5.0 270 < th dose independent rect. 3 3
50 130.14 precipitation 0.1 10 < th dose independent rect. 9 19
51 130.14 precipitation 0.1 10 < th dose dependent rect. 9 19
52 130.16 radiation 40.0 10 < th dose independent rect. 4 5
72 130.61 wind 5.0 270 < th dose independent rect. 4 1
77 130.81 atmosphere 1000.0 10 > th dose dependent rect. 4 5
82 130.99 radiation 10.0 270 < th dose dependent rect. 3 4
83 131.08 atmosphere 1000.0 10 > th dose independent rect. 20 8
84 131.11 radiation 30.0 90 < th dose independent rect. 3 8
87 131.26 wind 9.0 10 < th dose dependent rect. 4 5
89 131.27 wind 9.0 90 < th dose dependent rect. 3 6
99 131.61 temperature 10.0 270 > th dose dependent rect. 4 1
100 131.66 radiation 20.0 270 < th dose dependent rect. 2 6
112 131.73 atmosphere 995.0 10 > th dose dependent rect. 9 19
113 131.75 atmosphere 1010.0 270 < th dose independent rect. 3 3
121 131.88 radiation 10.0 270 < th dose independent rect. 3 4
128 132.08 precipitation 0.1 270 < th dose independent rect. 3 3
129 132.08 precipitation 0.1 270 < th dose dependent rect. 3 3
132 132.10 temperature 10.0 1440 > th dose independent rect. 4 6
135 132.10 atmosphere 995.0 1440 > th dose independent rect. 4 6
136 132.10 atmosphere 1015.0 1440 < th dose independent rect. 4 6
137 132.10 temperature 10.0 1440 > th dose independent rect. 10 18
140 132.10 radiation 1.0 270 < th dose dependent rect. 4 1
141 132.12 wind 1.0 270 > th dose independent rect. 3 2
145 132.16 temperature 10.0 270 > th dose independent rect. 3 3
147 132.16 temperature 30.0 270 < th dose independent rect. 3 3
148 132.16 humidity 50.0 270 > th dose independent rect. 3 3
151 132.16 atmosphere 995.0 270 > th dose independent rect. 3 3
156 132.16 wind 9.0 270 < th dose independent rect. 6 21
157 132.16 temperature 10.0 270 > th dose independent rect. 6 21
172 132.45 precipitation 0.1 270 < th dose independent rect. 4 1
174 132.45 precipitation 0.1 270 < th dose dependent rect. 4 1
177 132.46 temperature 10.0 270 > th dose independent rect. 4 1
179 132.46 temperature 30.0 270 < th dose independent rect. 4 1
180 132.46 humidity 50.0 270 > th dose independent rect. 4 1
183 132.46 atmosphere 995.0 270 > th dose independent rect. 4 1
184 132.46 atmosphere 1010.0 270 < th dose independent rect. 4 1
186 132.46 radiation 20.0 270 < th dose independent rect. 4 1
190 132.46 temperature 10.0 270 > th dose independent rect. 5 23
191 132.46 radiation 40.0 270 < th dose dependent rect. 4 1
194 132.47 radiation 20.0 270 < th dose dependent rect. 4 1
198 132.54 radiation 1.0 270 < th dose independent rect. 4 1
209 132.69 atmosphere 1000.0 270 > th dose dependent rect. 4 1
210 132.69 wind 9.0 270 < th dose dependent rect. 3 3
299 133.43 atmosphere 995.0 270 > th dose independent rect. 6 21
310 133.63 wind 9.0 270 < th dose dependent rect. 4 1
313 133.65 precipitation 0.1 270 < th dose independent rect. 6 21
314 133.65 precipitation 0.1 270 < th dose dependent rect. 6 21
315 133.69 radiation 1.0 270 < th dose independent rect. 3 9
317 133.71 wind 1.0 30 > th dose independent rect. 4 5
319 133.72 humidity 50.0 30 > th dose independent rect. 9 19
336 134.14 atmosphere 1005.0 10 > th dose independent rect. 4 5
341 134.16 radiation 1.0 10 > th dose independent rect. 9 6
350 134.31 wind 1.0 30 > th dose independent rect. 9 6
369 134.52 temperature 10.0 10 > th dose independent rect. 9 6
371 134.52 atmosphere 995.0 10 > th dose independent rect. 9 6
372 134.52 atmosphere 1015.0 10 < th dose independent rect. 9 6
373 134.52 precipitation 0.1 10 < th dose independent rect. 9 6
374 134.52 temperature 10.0 10 > th dose independent rect. 15 18
375 134.52 precipitation 0.1 10 < th dose dependent rect. 9 6
379 134.56 humidity 50.0 90 > th dose dependent rect. 3 6
381 134.57 humidity 50.0 270 > th dose dependent rect. 4 1
386 134.64 humidity 50.0 270 > th dose dependent rect. 3 3
424 134.89 radiation 40.0 10 < th dose independent rect. 4 16
431 134.94 temperature 10.0 1440 > th dose independent rect. 10 6
434 134.94 temperature 10.0 1440 > th dose independent rect. 16 18
437 134.94 precipitation 0.1 10 < th dose independent rect. 15 18
438 134.94 precipitation 0.1 10 < th dose dependent rect. 15 18
450 135.07 humidity 70.0 90 > th dose independent rect. 3 8
451 135.08 wind 9.0 30 < th dose independent rect. 15 18
458 135.13 atmosphere 995.0 10 > th dose dependent rect. 20 8
463 135.17 wind 9.0 10 < th dose independent rect. 9 6
485 135.36 atmosphere 1015.0 10 < th dose independent rect. 9 19
487 135.40 temperature 10.0 10 > th dose dependent rect. 15 18
489 135.43 radiation 1.0 270 < th dose dependent rect. 3 9
493 135.47 atmosphere 1015.0 10 < th dose independent rect. 15 18
500 135.50 radiation 40.0 30 < th dose independent rect. 15 18
544 135.76 wind 1.0 90 > th dose independent rect. 9 18
570 135.96 radiation 10.0 270 < th dose independent rect. 17 10
577 135.98 radiation 10.0 270 < th dose dependent rect. 17 10
580 136.00 humidity 80.0 10 < th dose independent rect. 9 6
582 136.01 atmosphere 1005.0 270 > th dose independent rect. 4 1
594 136.04 precipitation 0.1 270 < th dose independent rect. 9 1
596 136.04 precipitation 0.1 270 < th dose dependent rect. 9 1
598 136.05 wind 9.0 270 < th dose independent rect. 9 1
602 136.09 radiation 40.0 10 < th dose dependent rect. 4 5
603 136.10 temperature 10.0 270 > th dose independent rect. 9 1
604 136.10 atmosphere 995.0 270 > th dose independent rect. 9 1
605 136.10 atmosphere 1015.0 270 < th dose independent rect. 9 1
606 136.10 temperature 10.0 270 > th dose independent rect. 10 23
621 136.24 atmosphere 995.0 270 > th dose dependent rect. 18 8
622 136.25 humidity 50.0 270 > th dose independent rect. 9 1
656 136.41 radiation 1.0 270 > th dose independent rect. 9 1
696 136.60 humidity 50.0 270 > th dose independent rect. 6 21
711 136.65 temperature 10.0 270 > th dose independent rect. 18 9
712 136.65 humidity 50.0 270 > th dose independent rect. 18 9
716 136.65 temperature 10.0 270 > th dose independent rect. 3 15
717 136.65 atmosphere 1015.0 270 < th dose independent rect. 3 15
730 136.68 radiation 1.0 270 < th dose dependent rect. 3 14
736 136.70 wind 9.0 270 < th dose independent rect. 18 9
776 136.95 atmosphere 1015.0 30 < th dose dependent rect. 15 18
794 137.05 humidity 90.0 10 < th dose dependent rect. 9 6
818 137.11 temperature 30.0 270 < th dose independent rect. 18 9
845 137.26 atmosphere 995.0 10 > th dose independent rect. 9 8
846 137.28 atmosphere 1005.0 270 > th dose independent rect. 3 3
858 137.38 precipitation 0.1 270 < th dose independent rect. 3 15
860 137.38 precipitation 0.1 270 < th dose dependent rect. 3 15
886 137.45 atmosphere 995.0 10 > th dose independent rect. 15 18
913 137.56 wind 9.0 270 < th dose independent rect. 3 15
915 137.57 radiation 40.0 10 < th dose independent rect. 12 21
919 137.61 radiation 1.0 10 > th dose independent rect. 9 8
928 137.63 humidity 90.0 270 < th dose dependent rect. 9 1
943 137.67 wind 1.0 270 > th dose independent rect. 9 1
948 137.69 radiation 40.0 90 < th dose dependent rect. 15 18
951 137.72 humidity 50.0 4320 > th dose independent rect. 5 5