BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0300300 Os03g0300300|AK099693
         (637 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11240.1  | chr5:3582949-3586782 FORWARD LENGTH=616            466   e-131
AT5G64730.1  | chr5:25873146-25875021 FORWARD LENGTH=300           50   4e-06

>AT5G11240.1 | chr5:3582949-3586782 FORWARD LENGTH=616
          Length = 615

 Score =  466 bits (1200), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/591 (42%), Positives = 367/591 (62%), Gaps = 46/591 (7%)

Query: 8   IRDLLTSFSPAADFLALSSGDGRIKVWDAVRGHLQTEFADIPPVEVXXXXXXXXXXXXHL 67
           I+D+LTSFSPA D+LALS+GDGRIK+WD V+G +QTEFADI   E             HL
Sbjct: 6   IKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASTE--ETNIYTKVGKGHL 63

Query: 68  ALDYTCMKWVQLSSKKKRKAXXXXXXXXXXXXXXXALDVAAGQWKWRVTDCHPGGVTAVA 127
           ++DYTCMKW+ L  KKKRK                ALDVA+GQ KWR++DCHPGGV AV+
Sbjct: 64  SVDYTCMKWLSLEKKKKRKLGTSVLVLGTGGGDVLALDVASGQLKWRISDCHPGGVNAVS 123

Query: 128 YSKHGRSLYTGGTDGMVCRINASDGSVVEKFKSSSKAISALAVSPDGEILATAAGQLRTF 187
            S     +Y+GG DGMVC+I+   G+++ KFK+S+K +S+L VSPDG+IL TA+ QL+TF
Sbjct: 124 SSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVTASTQLKTF 183

Query: 188 DASDNKKIQKFSGHPVAVRSMVFSGDSQYVLSSGVGERYVAIWKLGSGKTQSSSCILSME 247
           + SD KKIQKF+GHP  VR + F+ D +YVLSS VGERY+A+WK    K QS+SC+L++E
Sbjct: 184 NCSDLKKIQKFTGHPGVVRCVAFTEDGKYVLSSAVGERYIAVWKTDGAKKQSASCVLALE 243

Query: 248 HPAIFVDCKCSDINDTEGEIHVLAISEIGVCYFWSGTNMDDLRNKKPTKIAL--SDSSLS 305
           HP +FVD   S     E  ++VLAISEIGVCYFW G+N+++L N  PTK+AL  +DSSL 
Sbjct: 244 HPPVFVD---SWGETNEKGLYVLAISEIGVCYFWYGSNVEELCNATPTKVALATADSSLK 300

Query: 306 RSKQGF-AIFAAKLQGIDGPNSAHVLLAYGSVVKPSFDKLLVRYGMDISLGVSDDGVLLP 364
             K     IFAAKLQGI  P SAH  +A G +VKPSF K+++++G D+ L  S DG+LLP
Sbjct: 301 PYKSSLPLIFAAKLQGILKPGSAHAFIASGLLVKPSFQKMVLQFGNDLVLNASKDGILLP 360

Query: 365 MIQPTKPQKGQSAKKQGI---ITALDRANAEDAILPLPQ---LHTQEKKRKHNATESSGD 418
           + Q       +S+K+QG+   +T LDRA+AEDA+LP+ +   LH ++  + H++ + +  
Sbjct: 361 ITQSV----SKSSKRQGVQNKVTTLDRAHAEDALLPIARVADLHEKKSVQLHSSDKDTYM 416

Query: 419 IQSAPHSDLSSTKLIEKRAPMQRIEDDSVCIEDMMRKCGVIDSRVDQGMEGHPSIPTSIL 478
           +  + H+D                  ++  +ED +R  G++      G + H ++  + +
Sbjct: 417 VDQS-HAD----------------HVETFSMEDKLRSLGILG-----GTDEHKNLSYASI 454

Query: 479 SDLFGSSSKIDANLPNKKIRAHLRSLKPGDACELLEKLVSSWKTRSGSAEVVLRWIYCLL 538
            D     + + A LP KK+++ + S++P  A + LE L + W+TR+     +L WIY ++
Sbjct: 455 ID----GTDLKAYLPPKKLKSAVLSMEPSTAFKTLEALAAMWQTRACGGRHLLPWIYSIM 510

Query: 539 IIHGRFIPFE--KSKKIISDLEKMCGERYKAAEDXXXXXXXXXXXMAQIVK 587
           + H  +I  +  K++++++ L K+   R  A +             AQI K
Sbjct: 511 VNHSHYIMSQEPKNQQLLNTLVKITKSRGTALQQLLQLSGRLQLVTAQINK 561



>AT5G64730.1 | chr5:25873146-25875021 FORWARD LENGTH=300
          Length = 299

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 3/114 (2%)

Query: 119 HPGGVTAVAYSKHGRSLYTGGTDGMVCRINASDGSVVEKFKSSSKAISALAVSPDGEILA 178
           H G V A  ++  G    T G D  +   N   G +++ +KS  + +  + V+ D     
Sbjct: 17  HEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHGREVRDVHVTSDNAKFC 76

Query: 179 TAAG--QLRTFDASDNKKIQKFSGHPVAVRSMVFSGDSQYVLSSGVGERYVAIW 230
           +  G  Q+  +D S  + I+KF GH   V ++ F+  S  V+S+G  +R + +W
Sbjct: 77  SCGGDRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSAGF-DRSLRVW 129



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,520,134
Number of extensions: 497516
Number of successful extensions: 1826
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1842
Number of HSP's successfully gapped: 2
Length of query: 637
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 532
Effective length of database: 8,227,889
Effective search space: 4377236948
Effective search space used: 4377236948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)