Os03g0298800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Spliceosomal protein.
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Os03g0298800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Spliceosomal protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.5 | 0.207 | 10.1 | 0.122 | 0.154 | -0.55 | -0.383 | 0.856 | -0.00115 | 13.2 | 24.99 | 3870 | -- | -- |
| 19.48 | 0.206 | 10.1 | 0.35 | 0.101 | -0.432 | -0.399 | -- | -0.00693 | 12.6 | 22.9 | 3023 | -- | -- |
| 20.04 | 0.209 | 10.1 | 0.136 | 0.156 | -0.545 | -- | 0.68 | -0.0129 | 13.8 | 24.77 | 3884 | -- | -- |
| 19.7 | 0.207 | 10.1 | 0.36 | 0.143 | -0.428 | -- | -- | 0.00275 | 13.9 | 22.89 | 2306 | -- | -- |
| 21.06 | 0.214 | 10.1 | 0.0902 | -- | -0.521 | -- | 0.838 | -0.00734 | -- | 24.56 | 4594 | -- | -- |
| 26.37 | 0.241 | 10 | 0.54 | 0.09 | -- | -0.346 | -- | 0.173 | 13.3 | -- | -- | -- | -- |
| 26.73 | 0.242 | 10 | 0.529 | 0.105 | -- | -- | -- | 0.172 | 15.2 | -- | -- | -- | -- |
| 20.64 | 0.212 | 10.1 | 0.369 | -- | -0.404 | -- | -- | 0.00948 | -- | 22.87 | 2009 | -- | -- |
| 20.39 | 0.21 | 10.1 | -- | 0.113 | -0.611 | -- | -- | -0.053 | 13.6 | 21.32 | 7208 | -- | -- |
| 27.36 | 0.244 | 10 | 0.525 | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
| 34.12 | 0.273 | 10.1 | -- | 0.0946 | -- | -- | -- | 0.113 | 15.2 | -- | -- | -- | -- |
| 21.12 | 0.214 | 10.1 | -- | -- | -0.61 | -- | -- | -0.0627 | -- | 21.31 | 7264 | -- | -- |
| 34.62 | 0.275 | 10.1 | -- | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.99 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 4 | 19.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 8 |
| 6 | 19.11 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 20 | 19.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 23 | 19.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 72 | 19.25 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 10 |
| 125 | 19.31 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 126 | 19.31 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 18 |
| 136 | 19.32 | temperature | 25 | 4320 | < th | dose independent | sin | 16 | NA |
| 151 | 19.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 18 |
| 153 | 19.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 189 | 19.36 | temperature | 25 | 4320 | > th | dose independent | sin | 16 | NA |
| 191 | 19.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 14 |
| 219 | 19.37 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 305 | 19.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 6 |
| 315 | 19.42 | temperature | 20 | 4320 | > th | dose dependent | sin | 13 | NA |
| 343 | 19.44 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 359 | 19.45 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 7 |
| 574 | 19.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 596 | 19.57 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 597 | 19.57 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 599 | 19.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 713 | 19.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 719 | 19.63 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 883 | 19.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 936 | 19.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 23 |
| 952 | 19.73 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 963 | 19.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 967 | 19.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 23 |