BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0298800 Os03g0298800|AK103337
         (232 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30260.1  | chr2:12905557-12907434 REVERSE LENGTH=233          261   2e-70
AT1G06960.1  | chr1:2135930-2137533 FORWARD LENGTH=230            257   3e-69
AT2G47580.1  | chr2:19517229-19518686 FORWARD LENGTH=251          190   5e-49

>AT2G30260.1 | chr2:12905557-12907434 REVERSE LENGTH=233
          Length = 232

 Score =  261 bits (667), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/233 (57%), Positives = 155/233 (66%), Gaps = 2/233 (0%)

Query: 1   MLSGDIPPNQTVYXXXXXXXXXXXXXXXSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60
           ML+ DIPPNQ++Y               SLY L SQ+GRILDVVALKTPKLRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPXXXXXXXXXXXXXXXXX 120
           E+TAA +A R +Q F FY K MR+QYAK +SDCLA  +G+  P                 
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 XXX-XXXSGPNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 179
                  +GP+A   S   G  A     + QE   PPNNILFIQNLP ETTSMMLQ+LF+
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQPSGQET-MPPNNILFIQNLPHETTSMMLQLLFE 179

Query: 180 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
           QYPGF+E+RMI+AKPGIAFVEYEDD Q+ +AMQ LQGFKITP NPM IS+AKK
Sbjct: 180 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232



>AT1G06960.1 | chr1:2135930-2137533 FORWARD LENGTH=230
          Length = 229

 Score =  257 bits (657), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 132/235 (56%), Positives = 156/235 (66%), Gaps = 9/235 (3%)

Query: 1   MLSGDIPPNQTVYXXXXXXXXXXXXXXXSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60
           ML+ DIPPNQ++Y               SLY L SQ+GR+LDVVALKTPKLRGQAWVVF+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPXXXXXXXXXXXXXXXXX 120
           E+TAA+NA R +Q F FY K MR+QYAK++SD +   +GS  P                 
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 XXXXXXSGPNAAAQSNGTG---YQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQIL 177
                 S PN A   NG     +Q S  G+ +     PPNNILFI NLP ET SMMLQ+L
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQPS--GQDT----MPPNNILFIHNLPIETNSMMLQLL 174

Query: 178 FQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
           F+QYPGF+E+RMIEAKPGIAFVEYEDD QS +AMQALQGFKITP NPM +S+AKK
Sbjct: 175 FEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229



>AT2G47580.1 | chr2:19517229-19518686 FORWARD LENGTH=251
          Length = 250

 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 106/239 (44%), Positives = 133/239 (55%), Gaps = 12/239 (5%)

Query: 5   DIPPNQTVYXXXXXXXXXXXXXXXSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEITA 64
           ++ PNQT+Y               SL A+ SQ+G+IL+++A KT K +GQAWVVF    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPXXXXXXXXXXXXXXXXXXXXX 124
           A+ A   +  F FY K MR+QYAKT+SD +A  DG+  P                     
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 125 XXSGPNAAAQSNGTGYQASR-----------LGKTSQEPPAPPNNILFIQNLPAETTSMM 173
             +       S   G   +            +     E PAPPNNILF+QNLP ETT M+
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 174 LQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
           LQ+LF QY GF+EVRMIEAKPGIAFVE+ D+ QS VAMQ LQGFKI   N M I+YAKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,110,834
Number of extensions: 129962
Number of successful extensions: 393
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 4
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)