Os03g0293900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit) (CPN-60 alpha).
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Os03g0293900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit) (CPN-60 alpha).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.69 | 0.311 | 9.86 | 0.0656 | 0.528 | -1.12 | 0.0997 | -0.908 | 0.357 | 18.5 | 26.1 | 126 | -- | -- |
| 44.35 | 0.31 | 9.87 | -0.0576 | 0.49 | -1 | 0.159 | -- | 0.346 | 18.4 | 27.97 | 133 | -- | -- |
| 43.55 | 0.307 | 9.86 | 0.0428 | 0.48 | -1.13 | -- | -0.778 | 0.352 | 18.7 | 27.33 | 125 | -- | -- |
| 44.24 | 0.31 | 9.87 | -0.0955 | 0.466 | -1.11 | -- | -- | 0.321 | 18.9 | 28.31 | 114 | -- | -- |
| 52.37 | 0.337 | 9.87 | -0.0558 | -- | -1.35 | -- | -0.611 | 0.285 | -- | 28.76 | 227 | -- | -- |
| 60.76 | 0.365 | 9.82 | 0.184 | 0.707 | -- | 0.247 | -- | 0.553 | 17.3 | -- | -- | -- | -- |
| 60.91 | 0.365 | 9.82 | 0.183 | 0.708 | -- | -- | -- | 0.554 | 17.3 | -- | -- | -- | -- |
| 52.85 | 0.339 | 9.87 | -0.17 | -- | -1.36 | -- | -- | 0.266 | -- | 29.27 | 237 | -- | -- |
| 44.46 | 0.311 | 9.87 | -- | 0.473 | -1.07 | -- | -- | 0.337 | 18.8 | 28.32 | 113 | -- | -- |
| 87.09 | 0.436 | 9.81 | 0.159 | -- | -- | -- | -- | 0.536 | -- | -- | -- | -- | -- |
| 61.8 | 0.368 | 9.83 | -- | 0.705 | -- | -- | -- | 0.533 | 17.3 | -- | -- | -- | -- |
| 53.55 | 0.341 | 9.87 | -- | -- | -1.3 | -- | -- | 0.296 | -- | 29.38 | 231 | -- | -- |
| 87.76 | 0.437 | 9.82 | -- | -- | -- | -- | -- | 0.518 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 2 | 42.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 3 | 42.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 5 | 42.17 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 25 | 43.07 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 29 | 43.25 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 48 | 43.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 53 | 44.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 56 | 44.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 60 | 44.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 61 | 44.14 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 70 | 44.23 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 75 | 44.32 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 77 | 44.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 78 | 44.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 88 | 44.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 105 | 44.46 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 112 | 44.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 126 | 44.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 135 | 44.65 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 157 | 44.73 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 170 | 44.77 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 179 | 44.82 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 21 |
| 298 | 45.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 306 | 45.53 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 309 | 45.56 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 23 |
| 382 | 45.85 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 23 |
| 461 | 46.20 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 475 | 46.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 482 | 46.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 520 | 46.39 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 545 | 46.45 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 548 | 46.46 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 622 | 46.65 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 749 | 46.93 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 766 | 46.96 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 811 | 47.04 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 855 | 47.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 892 | 47.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 901 | 47.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 8 |
| 908 | 47.20 | temperature | 25 | 720 | < th | dose dependent | sin | 21 | NA |