BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0293900 Os03g0293900|AK072637
         (49 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28000.1  | chr2:11926603-11929184 FORWARD LENGTH=587           54   1e-08
AT5G18820.1  | chr5:6271549-6274153 FORWARD LENGTH=576             47   2e-06

>AT2G28000.1 | chr2:11926603-11929184 FORWARD LENGTH=587
          Length = 586

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/49 (59%), Positives = 35/49 (71%)

Query: 1   IGGEVVVQKIEDSECKVSYNAMNIKYENSIKASVINPAKVRRCMLQNAA 49
           + GEVVV+KI  S+ +  YNAM   YEN  +A VI+PAKV RC LQNAA
Sbjct: 506 VEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAA 554



>AT5G18820.1 | chr5:6271549-6274153 FORWARD LENGTH=576
          Length = 575

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 1   IGGEVVVQKIEDSECKVSYNAMNIKYENSIKASVINPAKVRRCMLQNA 48
           + G VVVQK  + E +  YNAM+ KYE+ + A + +P +V R  LQNA
Sbjct: 494 VDGSVVVQKTRELEWRSGYNAMSGKYEDLLNAGIADPCRVSRFALQNA 541



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.127    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 931,225
Number of extensions: 21591
Number of successful extensions: 68
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 49
Length of database: 11,106,569
Length adjustment: 23
Effective length of query: 26
Effective length of database: 10,476,001
Effective search space: 272376026
Effective search space used: 272376026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)