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Os03g0293000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thioredoxin fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0307) R2 : 0.846
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.87 (0.0905) R2dC : 0.456 R2C : 0.702
β3 : -1.16 (0.0664) R2dE : 0.138 R2E : 0.382
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.189 (0.0644) R2dN8 : 0.00376 R2N8 : 0.00253
σ : 0.574
deviance : 151.93
__
_____
C
peak time of C : 7.76
E
wheather : radiation
threshold : 6.955
memory length : 8
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
144.59 0.565 10.3 0.0967 2.89 -1.15 0.636 -0.747 0.205 7.79 7.192 9 -- --
146.64 0.564 10.3 0.0793 2.9 -1.12 1.31 -- 0.198 7.85 7.149 9 -- --
145.33 0.561 10.3 0.111 2.91 -1.12 -- -1.02 0.202 7.81 7.192 9 -- --
151.55 0.573 10.3 0.116 2.88 -1.15 -- -- 0.2 7.78 7.035 8 -- --
477.1 1.02 10.4 0.145 -- -2.19 -- -1.01 0.223 -- 6.291 9 -- --
168.59 0.609 10.3 0.0759 3.75 -- 1.3 -- 0.26 8.96 -- -- -- --
174.34 0.618 10.3 0.12 3.75 -- -- -- 0.261 8.95 -- -- -- --
483.31 1.03 10.4 0.148 -- -2.19 -- -- 0.219 -- 6.157 7 -- --
151.93 0.574 10.3 -- 2.87 -1.16 -- -- 0.189 7.76 6.955 8 -- --
978.4 1.46 10.4 0.117 -- -- -- -- 0.286 -- -- -- -- --
174.72 0.618 10.3 -- 3.75 -- -- -- 0.248 8.95 -- -- -- --
473.15 1.01 10.4 -- -- -2.23 -- -- 0.192 -- 5.735 3 -- --
978.76 1.46 10.4 -- -- -- -- -- 0.273 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.61 radiation 10 30 < th dose dependent rect. 21 23
5 145.44 radiation 10 10 < th dose dependent rect. 7 23
9 146.90 radiation 10 10 < th dose dependent rect. 11 23
10 146.96 radiation 10 10 < th dose dependent no NA NA
11 146.97 radiation 10 10 < th dose dependent rect. 13 23
12 147.07 radiation 10 10 < th dose dependent rect. 9 23
14 147.29 radiation 10 10 < th dose dependent rect. 15 23
21 147.55 radiation 1 30 < th dose independent rect. 22 22
70 149.58 temperature 20 720 > th dose independent rect. 16 3
74 149.78 radiation 1 30 < th dose independent rect. 2 18
79 149.96 radiation 10 30 < th dose dependent rect. 1 19
97 150.48 radiation 10 10 < th dose dependent rect. 1 23
111 151.02 humidity 50 720 > th dose independent rect. 19 21
112 151.02 temperature 15 10 > th dose dependent rect. 5 12
114 151.06 radiation 1 30 > th dose independent sin 2 NA
120 151.15 radiation 1 30 < th dose independent sin 2 NA
121 151.22 temperature 10 10 > th dose dependent rect. 5 20
125 151.35 radiation 1 30 > th dose independent rect. 15 23
136 151.47 radiation 1 90 > th dose independent rect. 4 13
150 151.59 humidity 70 270 > th dose independent rect. 17 14
174 151.87 radiation 10 10 < th dose dependent sin 4 NA
208 152.31 humidity 90 720 < th dose independent rect. 16 3
213 152.36 radiation 10 30 < th dose independent rect. 7 22
224 152.52 radiation 10 10 < th dose dependent rect. 1 14
227 152.59 wind 1 270 < th dose dependent rect. 1 1
228 152.62 temperature 20 30 > th dose independent rect. 5 12
236 152.72 wind 9 270 < th dose dependent rect. 15 12
239 152.75 humidity 50 720 > th dose independent rect. 4 18
248 152.81 humidity 50 720 > th dose independent rect. 11 20
256 152.93 humidity 50 720 > th dose independent rect. 4 12
268 152.98 humidity 50 720 > th dose independent rect. 13 18
269 152.99 temperature 20 10 > th dose independent rect. 1 4
277 153.09 wind 7 270 < th dose independent rect. 15 12
287 153.18 humidity 50 720 > th dose independent rect. 10 6
312 153.39 radiation 1 30 > th dose independent no NA NA
388 153.49 radiation 1 30 < th dose independent no NA NA
389 153.49 radiation 1 30 < th dose independent rect. 11 21
395 153.49 radiation 1 30 < th dose independent rect. 13 23
396 153.49 radiation 1 30 < th dose independent rect. 15 23
398 153.53 radiation 1 30 < th dose independent rect. 17 23
406 153.59 temperature 20 10 > th dose dependent rect. 1 4
410 153.61 radiation 1 30 < th dose independent rect. 13 19
425 153.64 temperature 15 10 > th dose dependent rect. 5 9
430 153.66 wind 1 30 > th dose independent rect. 2 18
446 153.80 wind 5 10 < th dose independent rect. 18 2
456 153.90 wind 7 90 < th dose dependent rect. 17 11
483 154.05 radiation 1 30 < th dose independent rect. 15 21
488 154.06 radiation 10 10 < th dose independent rect. 13 16
519 154.15 atmosphere 1015 10 < th dose independent rect. 20 22
522 154.16 radiation 1 30 < th dose independent rect. 15 17
537 154.20 wind 7 720 < th dose independent rect. 16 3
550 154.27 temperature 10 10 > th dose dependent rect. 5 7
577 154.37 radiation 1 30 < th dose independent rect. 2 15
579 154.38 radiation 10 30 < th dose independent rect. 10 19
583 154.40 wind 9 10 < th dose dependent rect. 16 13
584 154.40 temperature 10 10 > th dose dependent rect. 20 22
592 154.45 humidity 50 720 > th dose independent rect. 12 10
595 154.46 humidity 50 720 > th dose independent rect. 10 14
600 154.47 humidity 50 720 > th dose independent rect. 13 3
615 154.55 humidity 90 10 < th dose independent rect. 6 12
628 154.61 temperature 30 270 < th dose independent rect. 18 13
640 154.66 temperature 25 30 > th dose independent rect. 20 22
645 154.67 radiation 1 30 < th dose independent rect. 1 23
668 154.75 wind 1 270 < th dose independent rect. 1 1
673 154.77 radiation 10 90 < th dose dependent rect. 23 15
676 154.78 temperature 20 10 > th dose independent rect. 5 9
680 154.78 atmosphere 1000 270 > th dose dependent rect. 16 5
707 154.86 temperature 25 720 < th dose dependent rect. 15 2
708 154.86 wind 9 10 < th dose dependent rect. 5 7
727 154.94 radiation 1 30 < th dose independent rect. 2 12
733 154.96 humidity 50 270 > th dose dependent rect. 15 7
740 154.99 atmosphere 1000 270 > th dose dependent rect. 15 7
748 155.04 temperature 30 10 < th dose dependent rect. 2 13
761 155.10 humidity 70 270 > th dose independent rect. 14 8
766 155.11 wind 7 10 < th dose dependent rect. 18 2
774 155.13 wind 5 90 < th dose independent rect. 17 12
814 155.24 atmosphere 1005 90 > th dose dependent rect. 1 4
815 155.24 radiation 10 30 < th dose dependent rect. 7 13
822 155.26 atmosphere 1005 270 > th dose independent rect. 16 6
828 155.27 atmosphere 1005 10 > th dose independent rect. 1 4
846 155.29 temperature 20 10 > th dose independent rect. 5 7
862 155.32 temperature 10 720 > th dose dependent rect. 4 3
863 155.32 atmosphere 1005 10 > th dose dependent rect. 2 3
896 155.42 wind 9 720 < th dose independent rect. 7 21
900 155.43 radiation 1 30 < th dose independent rect. 2 10
909 155.45 humidity 50 720 > th dose independent rect. 11 12
929 155.51 atmosphere 1005 270 > th dose dependent rect. 17 3
934 155.53 temperature 10 720 > th dose dependent rect. 16 2
938 155.54 radiation 1 30 < th dose independent rect. 2 6
964 155.57 radiation 1 30 > th dose independent rect. 13 23
967 155.58 wind 9 720 < th dose independent rect. 7 12