BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0293000 Os03g0293000|AK063376
         (449 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08970.1  | chr3:2737589-2740265 FORWARD LENGTH=573            382   e-106

>AT3G08970.1 | chr3:2737589-2740265 FORWARD LENGTH=573
          Length = 572

 Score =  382 bits (981), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/419 (44%), Positives = 277/419 (66%), Gaps = 7/419 (1%)

Query: 34  VFSNIFSGGSMGGSQHTGSAGKARRGTKSSGHDSSSVNIQEVTMQIFNKETADQGITWLL 93
           +FS +FSGGS  G +  G  G +    +S    S+   I+ +  Q++ K+  DQG+TWLL
Sbjct: 158 IFS-MFSGGSSKGKEQFGGFGSSSNA-ESKSKSSTVAAIKTINSQVYKKDVVDQGMTWLL 215

Query: 94  LFYTPNTKGQFVLESVVEDVARSLDGALRAGKVNCDHEKALCKKAGVSIGKSARLFIYSY 153
           L Y P+ +G    ES++E+VA SL GAL+ G++NC+ E +LCK+ G+   ++ R+F+YSY
Sbjct: 216 LSYLPSQRGSQYHESIIEEVAESLQGALKVGRLNCETESSLCKQLGIVPRRAPRMFVYSY 275

Query: 154 TTTEKGSLHEYSGDYDSKSLKTFCQEHLPRFSKRVDINQFSFPSNIIPNLPQVLLLSAKK 213
           T++ K +L EY+ +  +K +K+FCQEHLPRFSK++D+N F   +      P+VLLLS KK
Sbjct: 276 TSSGKATLAEYTEELVAKKVKSFCQEHLPRFSKKIDLNTFDVSAVSSQKTPKVLLLSTKK 335

Query: 214 DTPAMWRAVSGMFRSRLIFYDAEVQDVSHPLLKSLGVKNIPALIGRSVNGEEQLLKDGIS 273
           DTP +WR +SG++  R +FY+ EV D S P ++ LGV   PA++G   NGE+Q+LK GI+
Sbjct: 336 DTPVIWRVLSGLYNGRFVFYNTEVHDTSDPKIQKLGVDKFPAIVGWLSNGEKQVLKTGIT 395

Query: 274 VKDLRSGIXXXXXXXXXXXXXXXXXASNQAKKPAHTDQPKENKIPLLTASNFEEICGEKT 333
           VK+L+S +                 +S      A  +     KIPLL+  NF+ ICGE T
Sbjct: 396 VKNLKSAVQELGKLLEGLEKKNKKVSSKSQAGQAPNES--SEKIPLLSRPNFDSICGENT 453

Query: 334 SVCILGIFKSSKAKENLEAVLSEISQKTLIRGQNYNSG--NAVAYALLDGNKQSAFLSTF 391
            VCI+G F+SS  KE L++++S++SQK+L R Q   +G  + V+Y+LLD  KQSAFLS+ 
Sbjct: 454 PVCIIGAFRSSNGKEKLQSIMSKVSQKSLSRRQASTTGSQDTVSYSLLDATKQSAFLSSL 513

Query: 392 DKSAFK-SSDKLLLAYKPRRGRYAVYDNEVTMEEAERFVVSVLNGDVQLSAAGRKPVLR 449
           DKS FK SSDKLL+AYKPRRG++A +  ++T+EE E+FV +VLNGD+Q +   +KP ++
Sbjct: 514 DKSEFKTSSDKLLIAYKPRRGKFATFKGDMTIEEVEKFVAAVLNGDIQFTKTRQKPQIK 572



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,570,036
Number of extensions: 333515
Number of successful extensions: 757
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 755
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 347
Effective length of database: 8,310,137
Effective search space: 2883617539
Effective search space used: 2883617539
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)