Os03g0288700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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Os03g0288700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.21 | 0.421 | 6.92 | 0.933 | 1.11 | 1.83 | -0.118 | 1.01 | -0.0807 | 7.5 | 24.93 | 71 | -- | -- |
| 81.88 | 0.421 | 6.91 | 1.08 | 1.1 | 1.74 | -0.155 | -- | -0.0454 | 7.49 | 25.08 | 70 | -- | -- |
| 80.25 | 0.417 | 6.92 | 0.93 | 1.11 | 1.83 | -- | 1.01 | -0.0776 | 7.51 | 24.99 | 70 | -- | -- |
| 81.95 | 0.422 | 6.9 | 1.07 | 1.1 | 1.74 | -- | -- | -0.0471 | 7.47 | 25.05 | 70 | -- | -- |
| 120.91 | 0.512 | 6.91 | 1.21 | -- | 2.04 | -- | -0.214 | 0.0551 | -- | 28.71 | 355 | -- | -- |
| 125.46 | 0.525 | 6.98 | 0.657 | 1.18 | -- | 0.088 | -- | -0.389 | 6.4 | -- | -- | -- | -- |
| 125.48 | 0.525 | 6.98 | 0.658 | 1.18 | -- | -- | -- | -0.389 | 6.4 | -- | -- | -- | -- |
| 120.78 | 0.512 | 6.91 | 1.21 | -- | 2.1 | -- | -- | 0.0708 | -- | 28.7 | 351 | -- | -- |
| 109.44 | 0.487 | 6.95 | -- | 1.13 | 1.33 | -- | -- | -0.25 | 7.17 | 25.05 | 61 | -- | -- |
| 198.19 | 0.658 | 7.01 | 0.689 | -- | -- | -- | -- | -0.364 | -- | -- | -- | -- | -- |
| 136.91 | 0.547 | 7 | -- | 1.19 | -- | -- | -- | -0.462 | 6.37 | -- | -- | -- | -- |
| 155.72 | 0.581 | 6.96 | -- | -- | 1.7 | -- | -- | -0.148 | -- | 29.5 | 350 | -- | -- |
| 210.72 | 0.678 | 7.02 | -- | -- | -- | -- | -- | -0.44 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.66 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 2 | 79.49 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 4 | 80.10 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 7 | 80.17 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 8 | 80.29 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 9 | 80.31 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 14 | 80.51 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 24 | 80.98 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 25 | 81.02 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 45 | 81.38 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 82 | 82.36 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 130 | 83.75 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 219 | 86.17 | temperature | 25 | 90 | < th | dose dependent | sin | 7 | NA |
| 243 | 86.76 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 292 | 87.39 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 563 | 90.11 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 591 | 90.44 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 23 |
| 607 | 90.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 747 | 91.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 883 | 92.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 984 | 93.30 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 989 | 93.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |