BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0288700 Os03g0288700|AK110718
         (224 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03080.1  | chr5:721976-722656 FORWARD LENGTH=227              270   4e-73

>AT5G03080.1 | chr5:721976-722656 FORWARD LENGTH=227
          Length = 226

 Score =  270 bits (690), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 134/219 (61%), Positives = 154/219 (70%), Gaps = 6/219 (2%)

Query: 11  VPPSLKAITLTHVRYRRGDTLGLFLAWVSLVPVFISLGGFVSHFLFRRELQGICFAAGLL 70
           +P  LKA+TLTHVRYR GD LG FLAW+SLVPVFISLGGFVSHFLFRRELQGI F  GL+
Sbjct: 4   IPQQLKAVTLTHVRYRPGDQLGHFLAWISLVPVFISLGGFVSHFLFRRELQGIFFGIGLV 63

Query: 71  ASQLLNELIKHSVAQSRPVYCELLEACDSHGWPSSHSQYTFFFATYXXXXXXXXXXXXXV 130
            SQ +NE IK SV Q+RP  C LLEACDSHGWPSSHSQ+ FFFATY              
Sbjct: 64  ISQFINEFIKTSVEQARPETCTLLEACDSHGWPSSHSQFMFFFATYFSLMGCKGIGFWFG 123

Query: 131 VAS------LAWPLAFLTMLSRVYLGYHTXXXXXXXXXXXXXXXXIWYWIVNTMLVEYFP 184
           + S      L W LA +TM SRVYLGYHT                 W+W+VN++L  +FP
Sbjct: 124 LRSRWIMNLLHWSLAVVTMYSRVYLGYHTVAQVFAGAALGGIVGASWFWVVNSVLYPFFP 183

Query: 185 MIEESAIARWLYMKDTSHIPDVLKFEYDNARAARRKVAT 223
           +IEES + RWLY+KDTSHIPDVLKFEYDNARAAR+ + +
Sbjct: 184 VIEESVLGRWLYVKDTSHIPDVLKFEYDNARAARKDMDS 222



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,826,849
Number of extensions: 121537
Number of successful extensions: 404
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 129
Effective length of database: 8,502,049
Effective search space: 1096764321
Effective search space used: 1096764321
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)