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Os03g0285200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.47 (0.0368) R2 : 0.345
β1 : -1.66 (0.14) R2dD : 0.235 R2D : 0.111
β2 : 0.566 (0.0909) R2dC : 0.0556 R2C : 0.072
β3 : -1.48 (0.153) R2dE : 0.168 R2E : 0.068
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.177 (0.0828) R2dN8 : 0.0094 R2N8 : -0.0312
σ : 0.676
deviance : 210.94
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C
peak time of C : 3.2
E
wheather : radiation
threshold : 1.408
memory length : 4255
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
210.17 0.681 8.46 -1.49 0.629 -1.61 0.303 -1.03 -0.141 2.52 1.03 4316 -- --
211.09 0.677 8.46 -1.58 0.604 -1.4 0.3 -- -0.118 2.78 1.212 4289 -- --
210.46 0.676 8.46 -1.5 0.616 -1.6 -- -0.982 -0.146 2.58 1.07 4307 -- --
210.94 0.676 8.47 -1.66 0.566 -1.48 -- -- -0.177 3.2 1.408 4255 -- --
226.47 0.701 8.46 -1.5 -- -1.74 -- -0.856 -0.149 -- 1.419 4224 -- --
252.7 0.745 8.42 -1.2 0.668 -- 0.402 -- 0.116 2.47 -- -- -- --
253.28 0.745 8.42 -1.21 0.669 -- -- -- 0.114 2.44 -- -- -- --
227.33 0.702 8.48 -1.65 -- -1.66 -- -- -0.192 -- 1.64 4217 -- --
274.1 0.771 8.43 -- 0.54 -0.986 -- -- 0.0646 3.3 2.353 4234 -- --
279.66 0.781 8.41 -1.18 -- -- -- -- 0.13 -- -- -- -- --
292.05 0.799 8.39 -- 0.645 -- -- -- 0.249 2.41 -- -- -- --
290.23 0.793 8.43 -- -- -1.16 -- -- 0.0572 -- 2.51 4199 -- --
316.68 0.831 8.38 -- -- -- -- -- 0.262 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.93 radiation 1.0 4320 < th dose dependent rect. 4 2
2 202.95 radiation 1.0 4320 < th dose dependent rect. 2 4
3 202.95 radiation 1.0 4320 < th dose dependent rect. 22 8
4 202.98 radiation 1.0 4320 < th dose dependent rect. 24 6
9 203.02 radiation 1.0 4320 < th dose dependent rect. 18 13
10 203.08 radiation 1.0 4320 < th dose dependent rect. 19 11
27 204.70 radiation 1.0 4320 < th dose independent rect. 18 13
30 204.96 radiation 1.0 4320 > th dose independent rect. 18 13
43 205.44 radiation 1.0 4320 < th dose dependent sin 10 NA
62 206.30 radiation 1.0 4320 < th dose dependent rect. 18 2
63 206.35 radiation 30.0 14400 < th dose dependent rect. 22 7
67 206.51 radiation 1.0 4320 < th dose dependent rect. 18 5
76 206.71 radiation 1.0 14400 < th dose independent rect. 18 9
78 206.73 radiation 1.0 14400 < th dose independent rect. 18 2
80 206.77 radiation 1.0 14400 < th dose independent rect. 18 7
82 206.77 radiation 1.0 4320 < th dose dependent rect. 18 9
84 206.82 radiation 1.0 14400 < th dose independent rect. 18 5
115 207.30 radiation 1.0 4320 > th dose independent rect. 18 1
177 208.16 radiation 1.0 4320 < th dose independent sin 11 NA
180 208.18 radiation 1.0 14400 > th dose dependent rect. 18 1
192 208.21 radiation 1.0 4320 > th dose independent sin 11 NA
216 208.52 radiation 20.0 4320 < th dose dependent rect. 18 11
256 209.01 radiation 40.0 43200 < th dose dependent rect. 2 3
283 209.22 radiation 40.0 43200 < th dose dependent rect. 24 5
298 209.41 radiation 1.0 43200 < th dose dependent rect. 2 3
299 209.45 radiation 1.0 43200 < th dose dependent rect. 4 1
305 209.51 humidity 90.0 43200 < th dose independent rect. 19 2
311 209.59 radiation 30.0 4320 < th dose dependent rect. 18 2
330 209.77 radiation 1.0 4320 < th dose independent rect. 18 23
344 209.83 radiation 1.0 4320 > th dose independent rect. 18 23
377 209.99 radiation 20.0 43200 < th dose dependent rect. 4 1
412 210.14 radiation 1.0 4320 < th dose dependent rect. 4 16
413 210.14 radiation 1.0 4320 < th dose dependent rect. 2 18
420 210.16 radiation 1.0 4320 < th dose dependent rect. 4 19
422 210.16 radiation 1.0 4320 < th dose dependent rect. 2 21
423 210.16 radiation 1.0 4320 < th dose dependent rect. 22 22
438 210.18 radiation 40.0 43200 < th dose dependent rect. 19 10
463 210.20 radiation 1.0 4320 < th dose dependent rect. 4 23
472 210.22 radiation 1.0 4320 < th dose dependent no NA NA
503 210.51 humidity 80.0 43200 > th dose independent rect. 17 1
534 210.62 wind 7.0 43200 < th dose dependent rect. 11 1
538 210.62 radiation 1.0 14400 < th dose dependent rect. 6 23
539 210.63 precipitation 0.1 43200 < th dose independent rect. 20 2
540 210.63 precipitation 0.1 43200 < th dose dependent rect. 20 2
551 210.74 precipitation 0.1 43200 > th dose independent rect. 20 2
556 210.82 precipitation 0.1 43200 > th dose dependent rect. 20 2
566 210.90 precipitation 0.1 43200 > th dose independent rect. 15 4
580 210.94 radiation 1.0 14400 < th dose dependent rect. 6 19
588 210.95 radiation 1.0 14400 < th dose dependent rect. 6 17
590 210.96 precipitation 0.1 43200 > th dose independent rect. 17 2
612 211.01 precipitation 0.1 43200 < th dose independent rect. 15 4
614 211.01 precipitation 0.1 43200 < th dose dependent rect. 15 4
616 211.02 radiation 10.0 43200 > th dose independent rect. 5 1
646 211.07 humidity 80.0 43200 < th dose independent rect. 16 2
659 211.11 precipitation 0.1 43200 > th dose independent rect. 14 8
667 211.16 precipitation 0.1 43200 < th dose independent rect. 14 8
668 211.16 precipitation 0.1 43200 < th dose dependent rect. 14 8
671 211.19 precipitation 0.1 43200 < th dose independent rect. 17 2
672 211.19 precipitation 0.1 43200 < th dose dependent rect. 17 2
683 211.26 humidity 80.0 43200 > th dose dependent rect. 18 1
720 211.37 precipitation 0.1 43200 > th dose independent rect. 17 5
725 211.39 wind 5.0 43200 < th dose independent rect. 11 2
742 211.43 humidity 90.0 43200 > th dose independent rect. 20 1
769 211.46 precipitation 0.1 43200 < th dose independent rect. 17 5
772 211.46 precipitation 0.1 43200 < th dose dependent rect. 17 5
802 211.47 humidity 90.0 43200 < th dose independent rect. 8 2
805 211.47 wind 1.0 43200 > th dose dependent rect. 11 1
839 211.54 humidity 90.0 43200 < th dose independent rect. 5 5
840 211.54 precipitation 0.1 43200 > th dose independent rect. 11 11
845 211.55 radiation 1.0 43200 < th dose independent rect. 7 1
846 211.55 radiation 1.0 4320 < th dose independent rect. 5 2
853 211.56 precipitation 0.1 43200 < th dose independent rect. 11 11
856 211.56 precipitation 0.1 43200 < th dose dependent rect. 11 11
857 211.57 radiation 1.0 4320 > th dose independent rect. 5 2
862 211.59 atmosphere 1005.0 43200 > th dose independent rect. 19 1
863 211.59 radiation 1.0 43200 > th dose independent rect. 7 1
874 211.61 wind 5.0 43200 > th dose independent rect. 12 1
876 211.61 radiation 30.0 43200 < th dose independent rect. 16 13
897 211.64 radiation 30.0 43200 < th dose independent rect. 16 11
908 211.66 radiation 30.0 43200 < th dose independent rect. 16 4
912 211.67 radiation 1.0 4320 > th dose independent rect. 5 14
924 211.68 atmosphere 1005.0 43200 < th dose independent rect. 16 1
985 211.73 wind 5.0 43200 > th dose independent rect. 11 3
987 211.73 radiation 1.0 4320 < th dose independent rect. 5 22
998 211.75 radiation 1.0 4320 < th dose independent rect. 5 15
999 211.75 radiation 1.0 4320 < th dose independent rect. 5 20