Os03g0265200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Josephin-like protein.
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Os03g0265200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Josephin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.67 | 0.229 | 9.7 | 0.0822 | 0.42 | 0.646 | -0.312 | 0.966 | 0.0146 | 12.9 | 9.696 | 22 | -- | -- |
| 23.81 | 0.227 | 9.72 | -0.0457 | 0.459 | 0.537 | -0.113 | -- | -0.0171 | 12.3 | 18.68 | 190 | -- | -- |
| 23.85 | 0.227 | 9.7 | 0.0225 | 0.48 | 0.618 | -- | 0.602 | 0.0033 | 12.4 | 14.2 | 210 | -- | -- |
| 23.79 | 0.227 | 9.71 | -0.0577 | 0.492 | 0.525 | -- | -- | -0.0199 | 12.3 | 18.8 | 247 | -- | -- |
| 31.65 | 0.263 | 9.73 | -0.0891 | -- | 0.981 | -- | 0.394 | -0.0752 | -- | 17.2 | 78 | -- | -- |
| 28.15 | 0.249 | 9.7 | 0.0685 | 0.601 | -- | 0.0127 | -- | 0.0701 | 13.4 | -- | -- | -- | -- |
| 28.15 | 0.248 | 9.7 | 0.0689 | 0.601 | -- | -- | -- | 0.0702 | 13.4 | -- | -- | -- | -- |
| 31.67 | 0.262 | 9.74 | -0.15 | -- | 0.966 | -- | -- | -0.0937 | -- | 17.98 | 10 | -- | -- |
| 23.87 | 0.228 | 9.71 | -- | 0.495 | 0.508 | -- | -- | -0.0111 | 12.3 | 18.9 | 247 | -- | -- |
| 50.34 | 0.332 | 9.7 | 0.0452 | -- | -- | -- | -- | 0.0575 | -- | -- | -- | -- | -- |
| 28.27 | 0.249 | 9.7 | -- | 0.599 | -- | -- | -- | 0.0625 | 13.4 | -- | -- | -- | -- |
| 32.23 | 0.264 | 9.73 | -- | -- | 0.917 | -- | -- | -0.0724 | -- | 18.25 | 10 | -- | -- |
| 50.39 | 0.331 | 9.71 | -- | -- | -- | -- | -- | 0.0525 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.69 | temperature | 15 | 10 | > th | dose dependent | sin | 15 | NA |
| 12 | 19.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 17 | 19.95 | temperature | 30 | 10 | < th | dose dependent | sin | 15 | NA |
| 42 | 20.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 13 |
| 59 | 20.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 111 | 21.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 13 |
| 135 | 21.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 12 |
| 148 | 21.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 14 |
| 267 | 21.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 347 | 21.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 385 | 22.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 649 | 22.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 686 | 22.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 719 | 22.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 823 | 22.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 994 | 22.94 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 18 |