BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0265200 Os03g0265200|AK100867
         (202 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29640.1  | chr2:12671206-12673300 FORWARD LENGTH=361          226   6e-60
AT3G54130.1  | chr3:20042895-20044429 REVERSE LENGTH=281           62   2e-10

>AT2G29640.1 | chr2:12671206-12673300 FORWARD LENGTH=361
          Length = 360

 Score =  226 bits (576), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 101/162 (62%), Positives = 124/162 (76%), Gaps = 1/162 (0%)

Query: 30  KVYHERQRLQFCLLHALNNLMQEKESFTRAELDGIAGNLVQIDPNKEHWTPMSLIFKPHH 89
           K+YHERQRLQFCLLH LNNL Q+K++FT+  L+ IA  L   DPNKE WTP+S + KPHH
Sbjct: 7   KIYHERQRLQFCLLHCLNNLFQDKDAFTKESLNSIAEKLETNDPNKETWTPLSFVLKPHH 66

Query: 90  NVFTGNYDVNVLITALEARKKKVIWHDHRKGASSIDL-DADALFGLMINVPVRRFRGLWT 148
           N  TGNYDVNV+ITALE + K V+WHD R GASSIDL DAD L G+++NVPV+R+ GLW 
Sbjct: 67  NTITGNYDVNVMITALEGKGKSVVWHDKRIGASSIDLDDADTLMGIVLNVPVKRYGGLWR 126

Query: 149 GRHWVAIRSINGTWFNLDSDFSAPKEFQDKEKLIAFLDSILS 190
            RHWV +R ING W+NLDSD   P+ F+D +++  FLD  LS
Sbjct: 127 SRHWVVVRKINGVWYNLDSDLVVPQLFRDDDEVRGFLDQNLS 168



>AT3G54130.1 | chr3:20042895-20044429 REVERSE LENGTH=281
          Length = 280

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 21/176 (11%)

Query: 31  VYHERQRLQFCLLHALNNLMQEK------ESFTRAELDGIAGNLVQIDPNKEHWTPMSLI 84
           +YHE Q    C +H +N ++Q         +   A+LDG    ++        + P   +
Sbjct: 10  LYHEVQESNLCAVHCVNTVLQGPFFSEFDLAAVAADLDGKERQVMLEGAAVGGFAPGDFL 69

Query: 85  FKPHHNV-FTGNYDVNVLITALEARKKKVIWHDHRKG-ASSIDLDADALFGLMINVPVRR 142
            +  HNV   G++ + VL  ALE    +VI  +      + ID + ++ F   ++     
Sbjct: 70  AEESHNVSLGGDFSIQVLQKALEVWDLQVIPLNCPDAEPAQIDPELESAFICHLH----- 124

Query: 143 FRGLWTGRHWVAIRSINGTWFNLDSDFSAPKEFQDKEKLIAFLDSILSQGGEVMIV 198
                   HW  IR +NG W+N DS  +AP+    K  L AFLDS+   G  + IV
Sbjct: 125 -------DHWFCIRKVNGEWYNFDSLLAAPQHLS-KFYLSAFLDSLKGAGWSIFIV 172



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,163,004
Number of extensions: 162702
Number of successful extensions: 356
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 2
Length of query: 202
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 108
Effective length of database: 8,529,465
Effective search space: 921182220
Effective search space used: 921182220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)