FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0263000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to TINY-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0299) R2 : 0.0294
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.234 (0.063) R2dN8 : 0.038 R2N8 : 0.0294
σ : 0.564
deviance : 145.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.99 0.556 2.97 -0.169 0.106 1.33 -0.293 -3.79 0.253 22.9 49.67 182 -- --
142.29 0.556 2.95 -0.0877 0.13 0.744 -0.141 -- 0.231 21.5 49 208 -- --
140.34 0.552 2.96 -0.157 0.11 1.3 -- -3.63 0.253 22.5 49.65 181 -- --
142.11 0.555 2.95 -0.0748 0.133 0.594 -- -- 0.248 22.1 49.53 182 -- --
141.06 0.553 2.96 -0.159 -- 1.37 -- -3.89 0.255 -- 49.83 183 -- --
144.18 0.563 2.95 -0.0329 0.169 -- -0.155 -- 0.232 21 -- -- -- --
144.25 0.562 2.95 -0.027 0.172 -- -- -- 0.233 20.7 -- -- -- --
143.17 0.557 2.94 -0.0753 -- 0.639 -- -- 0.25 -- 49.7 183 -- --
142.26 0.556 2.95 -- 0.135 0.563 -- -- 0.256 22 49.84 178 -- --
145.91 0.564 2.95 -0.0274 -- -- -- -- 0.231 -- -- -- -- --
144.27 0.562 2.95 -- 0.172 -- -- -- 0.236 20.7 -- -- -- --
143.32 0.558 2.94 -- -- 0.617 -- -- 0.257 -- 49.97 183 -- --
145.93 0.564 2.95 -- -- -- -- -- 0.234 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.41 humidity 50.0 270 > th dose independent rect. 11 12
2 136.58 wind 1.0 720 > th dose independent rect. 19 12
3 136.75 precipitation 0.1 720 < th dose independent rect. 19 4
4 136.75 precipitation 0.1 720 < th dose dependent rect. 19 4
6 136.85 precipitation 0.1 720 < th dose independent rect. 19 12
7 136.85 precipitation 0.1 720 < th dose dependent rect. 19 12
8 136.95 wind 9.0 14400 < th dose independent rect. 22 3
9 137.03 radiation 20.0 270 < th dose independent rect. 19 12
10 137.03 humidity 50.0 90 > th dose independent rect. 19 23
11 137.06 wind 1.0 270 > th dose independent rect. 7 12
12 137.08 humidity 80.0 720 > th dose independent rect. 3 5
13 137.12 radiation 1.0 720 < th dose dependent rect. 17 7
15 137.18 temperature 10.0 90 > th dose dependent rect. 16 13
16 137.19 temperature 25.0 270 > th dose independent rect. 16 1
17 137.19 precipitation 0.1 720 < th dose independent rect. 19 20
18 137.19 wind 3.0 10 > th dose dependent rect. 18 3
19 137.19 precipitation 0.1 720 < th dose dependent rect. 19 20
23 137.30 humidity 50.0 720 > th dose independent rect. 7 4
25 137.33 wind 1.0 720 > th dose independent rect. 7 4
26 137.35 wind 7.0 10 > th dose independent rect. 19 1
29 137.35 wind 7.0 10 > th dose dependent rect. 19 1
32 137.36 temperature 10.0 270 > th dose independent rect. 7 12
33 137.36 temperature 10.0 270 > th dose independent rect. 19 12
34 137.36 temperature 30.0 270 < th dose independent rect. 19 12
35 137.36 humidity 50.0 270 > th dose independent rect. 19 12
36 137.36 atmosphere 995.0 270 > th dose independent rect. 19 12
37 137.36 atmosphere 1015.0 270 < th dose independent rect. 7 12
40 137.37 precipitation 0.1 720 < th dose independent rect. 11 20
42 137.37 precipitation 0.1 720 < th dose dependent rect. 11 20
43 137.39 precipitation 0.1 720 < th dose independent rect. 7 4
44 137.39 wind 9.0 270 < th dose independent rect. 19 12
45 137.39 precipitation 0.1 720 < th dose dependent rect. 7 4
46 137.41 temperature 10.0 720 > th dose independent rect. 7 4
47 137.41 temperature 10.0 720 > th dose independent rect. 19 4
48 137.41 temperature 30.0 720 < th dose independent rect. 19 4
49 137.41 humidity 50.0 720 > th dose independent rect. 19 4
50 137.41 atmosphere 995.0 720 > th dose independent rect. 7 4
51 137.41 atmosphere 995.0 720 > th dose independent rect. 19 4
52 137.41 atmosphere 1015.0 720 < th dose independent rect. 7 4
53 137.41 radiation 1.0 720 < th dose independent rect. 19 4
58 137.41 temperature 10.0 720 > th dose independent rect. 11 20
59 137.41 temperature 10.0 720 > th dose independent rect. 23 20
60 137.41 radiation 1.0 720 < th dose dependent rect. 19 4
69 137.46 wind 9.0 720 < th dose independent rect. 19 4
70 137.46 precipitation 0.1 720 < th dose independent rect. 3 4
72 137.46 precipitation 0.1 720 < th dose dependent rect. 3 4
74 137.47 wind 9.0 720 < th dose independent rect. 7 4
75 137.47 wind 9.0 14400 < th dose independent rect. 22 5
78 137.50 humidity 50.0 90 > th dose independent rect. 5 12
82 137.51 temperature 20.0 10 > th dose dependent rect. 16 5
83 137.52 radiation 40.0 720 < th dose independent rect. 15 4
84 137.52 wind 9.0 720 < th dose independent rect. 11 20
86 137.54 precipitation 0.1 270 < th dose independent rect. 7 12
87 137.54 precipitation 0.1 270 < th dose dependent rect. 7 12
88 137.56 wind 3.0 270 > th dose dependent rect. 16 1
90 137.57 radiation 40.0 270 < th dose dependent rect. 19 12
94 137.59 wind 1.0 720 > th dose independent rect. 4 3
95 137.59 temperature 20.0 720 > th dose independent rect. 16 3
105 137.67 radiation 40.0 270 < th dose independent rect. 15 13
106 137.67 wind 9.0 720 < th dose independent rect. 19 20
125 137.75 precipitation 0.1 270 < th dose independent rect. 4 11
126 137.75 precipitation 0.1 270 < th dose dependent rect. 4 11
128 137.76 wind 1.0 720 > th dose independent rect. 11 20
140 137.81 temperature 10.0 720 > th dose dependent rect. 16 3
141 137.83 wind 1.0 720 > th dose independent rect. 15 4
145 137.84 humidity 70.0 720 > th dose independent rect. 21 10
146 137.84 temperature 10.0 270 > th dose independent rect. 4 11
147 137.84 atmosphere 1015.0 270 < th dose independent rect. 4 11
148 137.84 temperature 10.0 270 > th dose independent rect. 15 13
152 137.86 temperature 20.0 30 > th dose dependent rect. 18 3
154 137.88 temperature 20.0 270 > th dose dependent rect. 16 1
155 137.89 radiation 20.0 720 < th dose independent rect. 3 4
156 137.89 wind 9.0 270 < th dose independent rect. 11 12
161 137.93 wind 9.0 14400 < th dose independent rect. 23 1
163 137.93 radiation 40.0 720 < th dose dependent rect. 4 3
166 137.95 temperature 10.0 720 > th dose independent rect. 15 4
167 137.95 atmosphere 1015.0 720 < th dose independent rect. 15 4
168 137.95 temperature 10.0 720 > th dose independent rect. 19 20
180 137.99 wind 9.0 720 < th dose independent rect. 11 5
184 138.01 wind 9.0 720 < th dose independent rect. 3 4
185 138.01 temperature 10.0 720 > th dose independent rect. 3 4
186 138.01 temperature 30.0 720 < th dose independent rect. 3 4
187 138.01 humidity 50.0 720 > th dose independent rect. 3 4
189 138.01 atmosphere 995.0 720 > th dose independent rect. 3 4
191 138.01 temperature 10.0 720 > th dose independent rect. 7 20
218 138.10 wind 9.0 270 < th dose independent rect. 4 11
219 138.10 wind 9.0 270 < th dose independent rect. 23 12
230 138.11 atmosphere 1015.0 720 < th dose independent rect. 4 3
234 138.12 atmosphere 995.0 270 > th dose independent rect. 4 11
235 138.12 humidity 50.0 720 > th dose dependent rect. 4 3
243 138.14 wind 1.0 720 > th dose independent rect. 19 4
249 138.16 precipitation 0.1 720 < th dose independent rect. 15 4
251 138.16 humidity 50.0 270 > th dose independent rect. 23 12
252 138.16 humidity 50.0 720 > th dose independent rect. 12 19
255 138.16 precipitation 0.1 720 < th dose dependent rect. 15 4
256 138.17 humidity 80.0 270 < th dose independent rect. 16 1
257 138.17 wind 1.0 720 > th dose independent rect. 9 10
262 138.19 atmosphere 1015.0 270 < th dose independent rect. 23 12
265 138.21 radiation 1.0 720 < th dose independent rect. 17 7
268 138.22 temperature 10.0 270 > th dose independent rect. 11 12
269 138.22 temperature 10.0 270 > th dose independent rect. 23 12
270 138.22 atmosphere 995.0 270 > th dose independent rect. 23 12
285 138.27 wind 3.0 90 > th dose dependent rect. 18 1
286 138.28 radiation 1.0 270 > th dose independent rect. 16 1
302 138.29 precipitation 0.1 720 < th dose independent rect. 23 20
303 138.29 precipitation 0.1 720 < th dose dependent rect. 23 20
319 138.32 precipitation 0.1 270 < th dose independent rect. 15 13
323 138.32 precipitation 0.1 270 < th dose dependent rect. 15 13
342 138.36 precipitation 0.1 270 < th dose independent rect. 11 12
343 138.36 precipitation 0.1 270 < th dose dependent rect. 11 12
346 138.37 humidity 90.0 270 < th dose dependent rect. 16 1
376 138.40 humidity 50.0 720 > th dose independent rect. 19 21
385 138.42 atmosphere 995.0 270 > th dose independent rect. 7 12
386 138.42 precipitation 0.1 270 < th dose independent rect. 23 12
387 138.42 wind 9.0 720 < th dose independent rect. 3 13
388 138.42 radiation 1.0 270 > th dose dependent rect. 16 1
390 138.42 precipitation 0.1 270 < th dose dependent rect. 23 12
392 138.43 temperature 10.0 720 > th dose independent rect. 11 5
393 138.43 atmosphere 1015.0 720 < th dose independent rect. 11 5
394 138.43 wind 9.0 270 < th dose independent rect. 7 12
396 138.43 temperature 10.0 720 > th dose independent rect. 16 19
410 138.45 atmosphere 995.0 720 > th dose independent rect. 19 20
413 138.46 wind 9.0 90 < th dose independent rect. 16 13
416 138.46 humidity 90.0 90 < th dose dependent rect. 16 5
418 138.47 wind 5.0 270 > th dose independent rect. 16 1
421 138.47 precipitation 0.1 10 < th dose independent rect. 16 14
424 138.47 precipitation 0.1 10 < th dose dependent rect. 16 14
425 138.48 wind 9.0 720 < th dose independent rect. 23 5
428 138.49 temperature 10.0 720 > th dose independent rect. 23 5
429 138.49 temperature 30.0 720 < th dose independent rect. 23 5
430 138.49 humidity 50.0 720 > th dose independent rect. 23 5
433 138.49 atmosphere 995.0 720 > th dose independent rect. 23 5
434 138.49 radiation 1.0 720 < th dose independent rect. 23 5
441 138.49 temperature 10.0 720 > th dose independent rect. 4 19
442 138.49 radiation 1.0 720 < th dose dependent rect. 23 5
449 138.50 temperature 20.0 10 > th dose independent rect. 16 5
451 138.51 humidity 80.0 90 < th dose independent rect. 16 4
452 138.51 precipitation 0.1 720 < th dose independent rect. 11 5
453 138.51 atmosphere 995.0 90 > th dose independent rect. 16 13
456 138.51 precipitation 0.1 720 < th dose dependent rect. 11 5
458 138.52 humidity 80.0 30 < th dose independent rect. 18 2
465 138.53 radiation 10.0 720 < th dose independent rect. 17 2
487 138.57 wind 1.0 720 > th dose independent rect. 19 6
492 138.58 atmosphere 995.0 10 > th dose independent rect. 16 14
498 138.59 humidity 50.0 30 > th dose independent rect. 21 21
501 138.60 radiation 1.0 720 > th dose independent rect. 7 4
507 138.61 radiation 40.0 90 < th dose independent rect. 21 12
510 138.62 wind 9.0 720 < th dose independent rect. 16 3
513 138.62 humidity 50.0 720 > th dose independent rect. 11 5
520 138.64 precipitation 0.1 720 < th dose independent rect. 7 20
522 138.64 precipitation 0.1 720 < th dose dependent rect. 7 20
525 138.65 wind 9.0 720 < th dose independent rect. 24 10
529 138.65 humidity 60.0 90 > th dose independent rect. 21 12
537 138.66 humidity 50.0 720 > th dose independent rect. 24 10
541 138.67 humidity 50.0 720 > th dose independent rect. 22 14
551 138.69 humidity 50.0 270 > th dose independent rect. 3 12
562 138.70 temperature 10.0 720 > th dose independent rect. 24 10
563 138.70 atmosphere 995.0 720 > th dose independent rect. 24 10
567 138.70 temperature 10.0 720 > th dose independent rect. 10 14
570 138.70 wind 9.0 720 < th dose dependent rect. 23 4
572 138.71 wind 3.0 90 > th dose independent rect. 16 5
574 138.71 humidity 50.0 720 > th dose independent rect. 4 19
577 138.72 temperature 15.0 10 > th dose independent rect. 16 14
580 138.73 temperature 20.0 10 > th dose independent rect. 18 3
588 138.73 radiation 1.0 720 > th dose independent rect. 16 20
592 138.74 wind 9.0 720 < th dose independent rect. 4 19
593 138.74 wind 1.0 720 > th dose independent rect. 19 20
606 138.77 atmosphere 995.0 14400 > th dose independent rect. 7 3
608 138.77 radiation 20.0 10 < th dose independent rect. 16 14
616 138.78 precipitation 0.1 720 < th dose independent rect. 23 5
617 138.78 precipitation 0.1 10 < th dose independent rect. 6 10
621 138.78 precipitation 0.1 720 < th dose independent rect. 4 19
623 138.78 precipitation 0.1 720 < th dose dependent rect. 23 5
624 138.78 precipitation 0.1 10 < th dose dependent rect. 6 10
625 138.78 temperature 10.0 90 > th dose dependent rect. 5 11
627 138.78 precipitation 0.1 720 < th dose dependent rect. 4 19
631 138.79 temperature 10.0 10 > th dose independent rect. 6 10
633 138.79 temperature 10.0 720 > th dose independent rect. 12 10
634 138.79 atmosphere 1015.0 10 < th dose independent rect. 6 10
638 138.79 temperature 10.0 720 > th dose independent rect. 22 14
639 138.79 atmosphere 995.0 720 > th dose independent rect. 22 14
649 138.80 temperature 20.0 90 > th dose independent rect. 9 12
664 138.82 precipitation 0.1 720 < th dose independent rect. 16 19
667 138.82 precipitation 0.1 720 < th dose dependent rect. 16 19
668 138.83 wind 1.0 270 < th dose independent rect. 24 3
671 138.83 atmosphere 1015.0 720 < th dose independent rect. 23 20
692 138.84 humidity 50.0 720 > th dose independent rect. 3 14
715 138.86 wind 9.0 90 < th dose independent rect. 9 12
720 138.86 radiation 40.0 10 < th dose dependent rect. 16 14
732 138.87 temperature 30.0 30 < th dose independent rect. 12 14
757 138.90 temperature 30.0 270 < th dose independent rect. 23 12
771 138.91 wind 9.0 720 < th dose independent rect. 12 10
782 138.92 atmosphere 995.0 14400 > th dose independent rect. 7 1
783 138.92 atmosphere 1010.0 270 < th dose independent rect. 21 1
784 138.92 radiation 10.0 720 < th dose independent rect. 17 10
786 138.92 humidity 60.0 10 > th dose independent rect. 21 13
805 138.93 temperature 10.0 90 > th dose independent rect. 21 12
807 138.93 atmosphere 995.0 90 > th dose independent rect. 21 12
851 138.95 humidity 50.0 270 > th dose dependent rect. 12 11
852 138.96 wind 9.0 90 < th dose independent rect. 21 12
854 138.96 radiation 40.0 10 < th dose independent rect. 21 13
871 138.99 atmosphere 995.0 720 > th dose independent rect. 16 3
873 138.99 wind 9.0 720 < th dose independent rect. 10 14
904 139.03 atmosphere 1015.0 90 < th dose independent rect. 16 13
928 139.05 temperature 20.0 10 > th dose independent rect. 9 12
943 139.06 radiation 1.0 90 > th dose independent rect. 4 12
961 139.07 humidity 60.0 90 < th dose independent rect. 16 18
983 139.09 precipitation 0.1 720 < th dose independent rect. 21 1
984 139.09 atmosphere 995.0 30 > th dose independent rect. 16 5
987 139.09 precipitation 0.1 720 < th dose independent rect. 10 14
991 139.09 precipitation 0.1 720 < th dose dependent rect. 21 1
994 139.09 radiation 40.0 10 < th dose dependent rect. 21 13
995 139.09 precipitation 0.1 720 < th dose dependent rect. 10 14
999 139.10 humidity 90.0 30 < th dose independent rect. 5 11
1000 139.10 atmosphere 995.0 30 > th dose dependent rect. 16 5