Os03g0259900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF593 family protein.
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Os03g0259900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF593 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.86 | 0.342 | 9.3 | 0.923 | 1.38 | 0.595 | -0.304 | -2.85 | 0.604 | 6.77 | 25.5 | 971 | -- | -- |
| 54.51 | 0.344 | 9.23 | 1.5 | 1.46 | 0.404 | 0.00114 | -- | 0.741 | 6.6 | 25.51 | 646 | -- | -- |
| 53.08 | 0.339 | 9.29 | 0.937 | 1.37 | 0.58 | -- | -2.7 | 0.606 | 6.76 | 25.5 | 987 | -- | -- |
| 54.48 | 0.344 | 9.23 | 1.48 | 1.46 | 0.389 | -- | -- | 0.735 | 6.58 | 26.08 | 630 | -- | -- |
| 136.69 | 0.547 | 9.24 | 1.72 | -- | -0.627 | -- | 0.382 | 0.826 | -- | 25.5 | 987 | -- | -- |
| 57.55 | 0.356 | 9.22 | 1.57 | 1.3 | -- | -0.156 | -- | 0.759 | 6.52 | -- | -- | -- | -- |
| 57.61 | 0.355 | 9.22 | 1.57 | 1.3 | -- | -- | -- | 0.759 | 6.52 | -- | -- | -- | -- |
| 136.74 | 0.547 | 9.24 | 1.68 | -- | -0.599 | -- | -- | 0.816 | -- | 25.5 | 987 | -- | -- |
| 70.87 | 0.392 | 9.34 | -- | 1.3 | 1.16 | -- | -- | 0.24 | 6.59 | 4.15 | 47520 | -- | -- |
| 145.18 | 0.563 | 9.25 | 1.6 | -- | -- | -- | -- | 0.786 | -- | -- | -- | -- | -- |
| 122.35 | 0.517 | 9.26 | -- | 1.32 | -- | -- | -- | 0.585 | 6.46 | -- | -- | -- | -- |
| 158.52 | 0.586 | 9.37 | -- | -- | 1.18 | -- | -- | 0.254 | -- | 2.911 | 47520 | -- | -- |
| 212.66 | 0.681 | 9.29 | -- | -- | -- | -- | -- | 0.609 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.68 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 9 |
| 3 | 49.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 10 |
| 5 | 49.86 | temperature | 25 | 10 | > th | dose independent | rect. | 15 | 17 |
| 6 | 49.88 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 7 | 49.91 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 15 |
| 9 | 49.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 16 | 50.04 | temperature | 20 | 30 | > th | dose dependent | sin | 13 | NA |
| 29 | 50.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 14 |
| 49 | 50.38 | temperature | 25 | 90 | > th | dose independent | rect. | 15 | 7 |
| 79 | 50.56 | temperature | 25 | 10 | > th | dose independent | rect. | 15 | 7 |
| 82 | 50.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 263 | 51.25 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 268 | 51.27 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 313 | 51.37 | temperature | 30 | 10 | < th | dose dependent | sin | 13 | NA |
| 453 | 51.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 465 | 51.73 | temperature | 25 | 10 | > th | dose independent | sin | 13 | NA |
| 515 | 51.83 | wind | 5 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 637 | 52.02 | radiation | 1 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 648 | 52.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 666 | 52.06 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 667 | 52.06 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 17 |
| 673 | 52.07 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 696 | 52.10 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 16 |
| 704 | 52.11 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 13 |
| 714 | 52.13 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 729 | 52.15 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 17 |
| 766 | 52.22 | temperature | 25 | 30 | < th | dose independent | sin | 14 | NA |
| 767 | 52.22 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 1 |
| 772 | 52.22 | radiation | 20 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 781 | 52.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 784 | 52.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 798 | 52.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 813 | 52.26 | radiation | 30 | 43200 | > th | dose dependent | rect. | 15 | 19 |
| 817 | 52.27 | radiation | 20 | 43200 | < th | dose dependent | rect. | 17 | 14 |
| 818 | 52.27 | radiation | 40 | 43200 | < th | dose dependent | rect. | 17 | 14 |
| 824 | 52.28 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 831 | 52.28 | radiation | 40 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 840 | 52.29 | radiation | 40 | 43200 | < th | dose independent | sin | 10 | NA |
| 857 | 52.30 | temperature | 25 | 90 | < th | dose independent | rect. | 17 | 11 |
| 861 | 52.31 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 873 | 52.32 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 875 | 52.32 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 884 | 52.33 | radiation | 30 | 43200 | > th | dose dependent | sin | 11 | NA |
| 885 | 52.33 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 897 | 52.33 | radiation | 1 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 933 | 52.35 | radiation | 40 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 982 | 52.37 | radiation | 30 | 43200 | > th | dose dependent | rect. | 14 | 2 |