FiT-DB / Search/ Help/ Sample detail
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Os03g0256400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.75 | 0.328 | 10.2 | -1.03 | 0.9 | 1.09 | 0.356 | -0.769 | -0.497 | 21.8 | 25.68 | 193 | -- | -- |
| 48.91 | 0.326 | 10.2 | -0.941 | 0.899 | 1.02 | 0.38 | -- | -0.481 | 21.8 | 25.6 | 193 | -- | -- |
| 49.22 | 0.327 | 10.2 | -1.05 | 0.892 | 1.11 | -- | -0.822 | -0.5 | 21.9 | 25.67 | 198 | -- | -- |
| 49.43 | 0.327 | 10.2 | -0.96 | 0.891 | 1.03 | -- | -- | -0.488 | 21.8 | 25.53 | 198 | -- | -- |
| 78.64 | 0.413 | 10.2 | -1.14 | -- | 1.36 | -- | -0.656 | -0.573 | -- | 24.74 | 563 | -- | -- |
| 65.09 | 0.378 | 10.2 | -0.777 | 1.05 | -- | 0.737 | -- | -0.429 | 20.2 | -- | -- | -- | -- |
| 66.74 | 0.383 | 10.2 | -0.799 | 1.05 | -- | -- | -- | -0.429 | 20.3 | -- | -- | -- | -- |
| 78.97 | 0.414 | 10.2 | -1.05 | -- | 1.31 | -- | -- | -0.549 | -- | 24.7 | 559 | -- | -- |
| 72.74 | 0.397 | 10.2 | -- | 0.913 | 0.8 | -- | -- | -0.357 | 21.3 | 25.94 | 202 | -- | -- |
| 127.81 | 0.528 | 10.1 | -0.806 | -- | -- | -- | -- | -0.441 | -- | -- | -- | -- | -- |
| 83.55 | 0.428 | 10.2 | -- | 1.06 | -- | -- | -- | -0.34 | 20.2 | -- | -- | -- | -- |
| 106.65 | 0.481 | 10.1 | -- | -- | 1.14 | -- | -- | -0.409 | -- | 25 | 521 | -- | -- |
| 144.95 | 0.562 | 10.1 | -- | -- | -- | -- | -- | -0.351 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.30 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 6 | 47.12 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 12 | 47.55 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 6 |
| 15 | 47.68 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 14 |
| 16 | 47.70 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 12 |
| 22 | 47.88 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 26 | 47.95 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 19 |
| 53 | 48.47 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 152 | 49.16 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 202 | 49.31 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 450 | 50.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 462 | 50.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 12 |
| 472 | 50.44 | temperature | 10 | 90 | > th | dose dependent | sin | 21 | NA |
| 486 | 50.52 | temperature | 10 | 270 | > th | dose dependent | sin | 23 | NA |
| 586 | 50.93 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 610 | 51.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 5 |
| 650 | 51.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 652 | 51.19 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 22 |
| 781 | 51.62 | temperature | 30 | 270 | > th | dose independent | sin | 3 | NA |
| 851 | 51.84 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 14 |
| 881 | 51.92 | temperature | 30 | 270 | < th | dose independent | sin | 2 | NA |
| 905 | 51.99 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 6 |
