BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0256400 Os03g0256400|AK073854
(568 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26900.1 | chr4:13515514-13519608 FORWARD LENGTH=593 873 0.0
>AT4G26900.1 | chr4:13515514-13519608 FORWARD LENGTH=593
Length = 592
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/542 (76%), Positives = 476/542 (87%), Gaps = 1/542 (0%)
Query: 28 TVAVRASGDA-STVTLLDYGAGNVRSVRNAIRHLGFGIRDVRSPEDILAADRLVFPGVGA 86
+++VRAS + S VTLLDYGAGNVRS+RNA+RHLGF I+DV++P DIL ADRL+FPGVGA
Sbjct: 51 SLSVRASSTSDSVVTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNADRLIFPGVGA 110
Query: 87 FGSAMDVLTRSGMADALREYIRRDRPFLGICLGLQLLFDSSEENGPISGLGVIPGVVRRF 146
F AMDVL R+GMA+AL +YI DRPFLGICLGLQLLFDSSEENGP+ GLGVIPG+V RF
Sbjct: 111 FAPAMDVLNRTGMAEALCKYIENDRPFLGICLGLQLLFDSSEENGPVKGLGVIPGIVGRF 170
Query: 147 DSSKGLIVPHIGWNALEITKDTQLLKGAEGHHVYFVHSYHALPSDENKEWISSVCNYGES 206
D+S G+ VPHIGWNAL++ KD+++L HVYFVHSY A+PSDENK+WISS CNYGES
Sbjct: 171 DASAGIRVPHIGWNALQVGKDSEILDDVGNRHVYFVHSYRAIPSDENKDWISSTCNYGES 230
Query: 207 FISSISMGNIQAVQFHPEKSGATGLSILKNFLSPNTSGSKVPSRRKASNLAKRVIACLDV 266
FISSI GN+ AVQFHPEKSG GLS+L+ FL P ++ P KAS LAKRVIACLDV
Sbjct: 231 FISSIRRGNVHAVQFHPEKSGEVGLSVLRRFLHPKLPATQKPMEGKASKLAKRVIACLDV 290
Query: 267 RSNDSGDLVVTKGDQYDVRDHSSSKEVRNLGKPVDLASQYYIDGADEVSFLNITGFRDFP 326
R+ND GDLVVTKGDQYDVR+ S+ EVRNLGKPVDLA QYY DGADE+SFLNITGFRDFP
Sbjct: 291 RTNDKGDLVVTKGDQYDVREQSNENEVRNLGKPVDLAGQYYKDGADEISFLNITGFRDFP 350
Query: 327 LGDLPMLEVLRCASEKVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSD 386
LGDLPM++VLR S+ VFVPLTVGGGIRDFTDA+GRYYSSLEVA+EYFRSGADKISIGSD
Sbjct: 351 LGDLPMIQVLRQTSKNVFVPLTVGGGIRDFTDASGRYYSSLEVAAEYFRSGADKISIGSD 410
Query: 387 AVFAAEAYLQTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYVKNPEEVQFKTVKVSNKG 446
AV AAE ++++GVKTGKSSLEQISRVYGNQAVVVSIDPRRVYV +P++V +K ++V+N G
Sbjct: 411 AVSAAEEFIKSGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYVNHPDDVPYKVIRVTNPG 470
Query: 447 PLGEEYAWYQCTVSGGRDSRPIGAYELAKAVEELGAGEILLNCIDCDGQGCGFDIDLVKM 506
P GEEYAWYQCTVSGGR+ RPIGA+ELAKAVEELGAGEILLNCIDCDGQG GFDIDLVK+
Sbjct: 471 PNGEEYAWYQCTVSGGREGRPIGAFELAKAVEELGAGEILLNCIDCDGQGKGFDIDLVKL 530
Query: 507 VSDAVTIPVIASSGAGTVEHFSEVFEKTNASAALAAGIFHRKEVPISAVKEHLVDAGVEV 566
+SD+V IPVIASSGAGT +HFSEVFEKTNASAALAAGIFHRKEVPI +VKEHL + +EV
Sbjct: 531 ISDSVGIPVIASSGAGTPDHFSEVFEKTNASAALAAGIFHRKEVPIQSVKEHLQEERIEV 590
Query: 567 RV 568
R+
Sbjct: 591 RI 592
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,000,017
Number of extensions: 526253
Number of successful extensions: 1278
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1277
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 464
Effective length of database: 8,255,305
Effective search space: 3830461520
Effective search space used: 3830461520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)