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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0253400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor, MADS-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0383) R2 : 0.101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.11 (0.163) R2dE : 0.104 R2E : 0.101
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0228 (0.0851) R2dN8 : 0.00021 R2N8 : -0.00278
σ : 0.709
deviance : 231.68
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C
peak time of C : --
E
wheather : temperature
threshold : 27.5
memory length : 763
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.43 0.709 3.34 0.132 0.00909 1.31 -0.562 1.17 0.0396 11.9 25.93 767 -- --
228.51 0.704 3.32 0.347 0.00569 1.23 0.367 -- 0.079 23.9 27.49 785 -- --
228.36 0.704 3.33 0.266 0.116 1.32 -- 0.434 0.079 18.1 27.48 707 -- --
228.66 0.704 3.33 0.31 0.19 1.28 -- -- 0.0641 17.2 28.83 632 -- --
228.64 0.704 3.33 0.21 -- 1.31 -- 0.794 0.0711 -- 26.35 764 -- --
251.6 0.744 3.37 -0.00392 0.212 -- -0.348 -- -0.183 11.1 -- -- -- --
252.09 0.744 3.37 -0.0188 0.216 -- -- -- -0.185 10.7 -- -- -- --
229.08 0.705 3.31 0.34 -- 1.24 -- -- 0.0894 -- 27.42 782 -- --
230.97 0.708 3.34 -- 0.289 1.2 -- -- 0.0193 15.9 30.13 483 -- --
254.97 0.746 3.38 -0.0231 -- -- -- -- -0.186 -- -- -- -- --
252.1 0.743 3.37 -- 0.216 -- -- -- -0.183 10.7 -- -- -- --
231.68 0.709 3.33 -- -- 1.11 -- -- 0.0228 -- 27.5 763 -- --
254.98 0.745 3.38 -- -- -- -- -- -0.184 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 225.09 temperature 10 720 > th dose dependent rect. 21 17
2 225.36 temperature 30 720 < th dose dependent rect. 24 21
18 226.39 temperature 30 720 < th dose dependent rect. 18 18
31 226.72 temperature 25 720 < th dose dependent rect. 4 22
53 227.11 temperature 10 720 > th dose dependent rect. 20 14
80 227.37 temperature 10 720 > th dose dependent sin 7 NA
88 227.43 temperature 20 1440 > th dose independent rect. 4 1
90 227.45 temperature 10 720 > th dose dependent rect. 12 22
97 227.47 temperature 25 720 < th dose dependent rect. 17 23
99 227.50 temperature 20 1440 < th dose independent rect. 4 1
106 227.54 temperature 30 270 < th dose dependent rect. 7 23
128 227.63 temperature 30 720 < th dose dependent sin 7 NA
129 227.63 temperature 25 720 < th dose dependent no NA NA
141 227.68 temperature 15 720 > th dose dependent rect. 17 21
158 227.79 temperature 25 720 < th dose dependent rect. 4 18
190 227.96 temperature 30 90 < th dose dependent rect. 9 22
244 228.20 temperature 20 1440 > th dose dependent rect. 1 2
267 228.28 temperature 25 1440 > th dose independent rect. 9 13
279 228.34 temperature 25 1440 < th dose independent rect. 9 14
319 228.48 temperature 10 720 > th dose dependent rect. 2 8
324 228.49 temperature 10 720 > th dose dependent rect. 17 17
357 228.62 temperature 20 1440 > th dose dependent rect. 23 6
367 228.66 temperature 20 1440 > th dose dependent rect. 21 8
402 228.73 temperature 20 1440 > th dose dependent rect. 21 6
411 228.75 temperature 25 1440 < th dose independent rect. 13 9
433 228.80 temperature 25 1440 > th dose independent sin 20 NA
458 228.86 temperature 25 1440 < th dose independent sin 19 NA
466 228.88 temperature 25 1440 > th dose independent rect. 13 9
477 228.91 temperature 15 10 > th dose dependent rect. 22 23
551 229.13 temperature 25 1440 < th dose dependent rect. 21 1
570 229.17 temperature 20 1440 > th dose dependent sin 11 NA
739 229.51 temperature 25 1440 < th dose independent rect. 2 20
753 229.53 radiation 1 4320 < th dose dependent rect. 20 9
774 229.58 temperature 15 270 > th dose dependent rect. 1 23
805 229.64 temperature 20 1440 > th dose dependent rect. 4 2
844 229.70 temperature 15 270 > th dose dependent no NA NA
862 229.73 temperature 25 1440 < th dose dependent rect. 21 6
901 229.80 temperature 25 1440 < th dose dependent rect. 17 11
927 229.84 temperature 25 1440 < th dose dependent rect. 2 1
994 229.95 temperature 25 1440 < th dose dependent sin 13 NA