BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0253400 Os03g0253400|Os03g0253400
(185 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G60440.1 | chr5:24306329-24307520 FORWARD LENGTH=300 62 1e-10
AT2G34440.1 | chr2:14526950-14527468 FORWARD LENGTH=173 60 5e-10
AT2G24840.1 | chr2:10581082-10581876 FORWARD LENGTH=265 60 9e-10
AT1G48150.1 | chr1:17785397-17786368 FORWARD LENGTH=324 57 4e-09
AT1G47760.1 | chr1:17572451-17573159 FORWARD LENGTH=185 57 6e-09
AT1G60920.1 | chr1:22429692-22430267 REVERSE LENGTH=192 56 8e-09
AT4G36590.1 | chr4:17261146-17262189 REVERSE LENGTH=249 56 1e-08
AT1G28460.1 | chr1:10006230-10006778 FORWARD LENGTH=183 56 1e-08
AT1G46408.1 | chr1:17232135-17232935 REVERSE LENGTH=267 53 7e-08
AT4G24540.1 | chr4:12671160-12673645 REVERSE LENGTH=221 52 2e-07
AT1G29962.1 | chr1:10496730-10497287 FORWARD LENGTH=186 51 4e-07
AT5G27130.1 | chr5:9546633-9547553 FORWARD LENGTH=307 50 6e-07
AT3G66656.1 | chr3:2091262-2091798 REVERSE LENGTH=179 50 7e-07
AT1G65360.1 | chr1:24281337-24282151 FORWARD LENGTH=227 50 7e-07
AT1G01530.1 | chr1:192640-193662 REVERSE LENGTH=248 49 1e-06
AT1G28450.1 | chr1:10003966-10004523 FORWARD LENGTH=186 49 2e-06
AT5G10140.1 | chr5:3173724-3179339 REVERSE LENGTH=197 48 3e-06
AT1G22130.1 | chr1:7812387-7814259 REVERSE LENGTH=336 48 3e-06
AT3G57230.1 | chr3:21177710-21180671 FORWARD LENGTH=241 48 3e-06
AT1G72350.1 | chr1:27239273-27239947 REVERSE LENGTH=225 48 3e-06
AT2G45650.1 | chr2:18804453-18806291 FORWARD LENGTH=253 47 6e-06
>AT5G60440.1 | chr5:24306329-24307520 FORWARD LENGTH=300
Length = 299
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 10 RKKIE-IKRGDKKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
R+KIE +K ++ FSKR + +F KA+EL LCG VA+V SP +FSFG+P
Sbjct: 8 RQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGR--KVFSFGHP 65
Query: 69 SVSSVANRFLANAP 82
+V SV +RF+ N P
Sbjct: 66 NVDSVIDRFINNNP 79
>AT2G34440.1 | chr2:14526950-14527468 FORWARD LENGTH=173
Length = 172
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 10 RKKIEIKR-GDKKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
R+KI+++ D R FSKR T +F KA+ELA LC + +V SP G FS+G P
Sbjct: 3 RRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSP--GGKPFSYGKP 60
Query: 69 SVSSVANRFLANAPNNTS 86
++ SVA RF+ ++ S
Sbjct: 61 NLDSVAERFMREYDDSDS 78
>AT2G24840.1 | chr2:10581082-10581876 FORWARD LENGTH=265
Length = 264
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 10 RKKIEIKRGDKKV-RDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
R+KI + + K+ R FSKR +F KA+EL LCG + ++ SP FSFG+P
Sbjct: 64 RQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKP--FSFGHP 121
Query: 69 SVSSVANRFLANAPNNTSVSSSTQ 92
SV SV +R+++ NN S++ S Q
Sbjct: 122 SVESVLDRYVSR--NNMSLAQSQQ 143
>AT1G48150.1 | chr1:17785397-17786368 FORWARD LENGTH=324
Length = 323
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 5 RARTTRKKIEI-KRGDKKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGG-I 62
R R T++KIEI KR K+ R SKR T+F+KA +L +L G +AV SP+ N +
Sbjct: 12 RKRGTKRKIEIEKRMTKQQRSVACSKRRPTLFSKAADLCLLSGANIAVFVTSPDENSDVV 71
Query: 63 FSF-GYPSVSSVANRFLAN-APNNTSVSSST 91
+SF GY S + + +L N +P T+++ +
Sbjct: 72 YSFSGYSHASEIVDCYLNNKSPPKTTINPES 102
>AT1G47760.1 | chr1:17572451-17573159 FORWARD LENGTH=185
Length = 184
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 10 RKKIEIKRGDKKV-RDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
R+KIEIK + + R A FS+R IF KA+ELA LC V +AV+ +SP +++GYP
Sbjct: 3 RRKIEIKFIEDSIERKATFSRRRNGIFKKADELAKLCNVEIAVLVISP--TNIPYTYGYP 60
Query: 69 SVSSVANRFLANAPNNTSVSSSTQS 93
+ V R N S SS +S
Sbjct: 61 CFNDVVERI-----QNPSASSKLRS 80
>AT1G60920.1 | chr1:22429692-22430267 REVERSE LENGTH=192
Length = 191
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 9 TRKKIEIKR-GDKKVRDACFSKRHTTIFNKANELAILC-GVMVAVVF--VSPNANGGIFS 64
T++KIE+KR DK VR F+KR + +F+KA+EL +L G +A++ +S +++ +S
Sbjct: 4 TKRKIEMKRIEDKNVRAVAFTKRKSGLFHKASELCLLSPGTQIAILATPLSSHSHASFYS 63
Query: 65 FGYPSVSSVANRFLANAPNNTSVSSSTQSG 94
FG+ SV V + L N + + +SG
Sbjct: 64 FGHSSVDHVVSSLLHNQHPSLPTNQDNRSG 93
>AT4G36590.1 | chr4:17261146-17262189 REVERSE LENGTH=249
Length = 248
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 4 CRARTTRKKIEIKRGDKKVR-DACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGI 62
R+ R+KIE+K+ + + FSKR +F KA+EL L G + ++ SP G +
Sbjct: 2 VRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSP--GGKV 59
Query: 63 FSFGYPSVSSVANRFLANAPNNTS 86
FSFG+PSV + +RF + PN+ S
Sbjct: 60 FSFGHPSVQELIHRF--SNPNHNS 81
>AT1G28460.1 | chr1:10006230-10006778 FORWARD LENGTH=183
Length = 182
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 10 RKKIEIKRGDKKV-RDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
++KI IK+ +K R FSKR I+ K +EL+ILCGV VA F+ + +G ++FG P
Sbjct: 9 KQKINIKKIEKDEGRSVTFSKRLNGIYTKISELSILCGVEVA--FIGYSCSGKPYTFGSP 66
Query: 69 SVSSVANRFL 78
S +VA RFL
Sbjct: 67 SFQAVAERFL 76
>AT1G46408.1 | chr1:17232135-17232935 REVERSE LENGTH=267
Length = 266
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 10 RKKIEIKR-GDKKVRDACFSKRHTTIFNKANELAILCGVMVAVVF--VSPNANGGIFSFG 66
++KI I++ +K R FSKR +++KA+EL +L +A++ VS N+N +SFG
Sbjct: 5 KRKIAIEKIQNKNPRAVSFSKRRKGLYSKASELCLLSDAEIAIIATPVSSNSNAAFYSFG 64
Query: 67 YPSVSSVANRFLAN 80
+ SV +V FLAN
Sbjct: 65 HSSVDNVVAAFLAN 78
>AT4G24540.1 | chr4:12671160-12673645 REVERSE LENGTH=221
Length = 220
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 10 RKKIEIKRGDK-KVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
R+KI IK+ D R FSKR IF KA+EL++LC VA++ S A G +F F
Sbjct: 3 REKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFS--ATGKLFEFSSS 60
Query: 69 SVSSVANRFLANAPN 83
+ + R+ +A N
Sbjct: 61 RMRDILGRYSLHASN 75
>AT1G29962.1 | chr1:10496730-10497287 FORWARD LENGTH=186
Length = 185
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 2 VKCRARTTRKKIEIKRGDK-KVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANG 60
+K + +++I IK+ +K + R SKR I+ K +EL+ILCG VA F+ + +G
Sbjct: 1 MKPKKTKGKQRINIKKIEKDEDRLVTLSKRRNGIYTKLSELSILCGAEVA--FLGYSCSG 58
Query: 61 GIFSFGYPSVSSVANRFL 78
++FG PS +VA RFL
Sbjct: 59 KPYTFGSPSFQAVAERFL 76
>AT5G27130.1 | chr5:9546633-9547553 FORWARD LENGTH=307
Length = 306
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 9 TRKKIEIK-RGDKKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSP-NANGGIFSF- 65
T++KIEIK R K+ R SKR T+F+KA +L ++ G +AV SP +++ ++SF
Sbjct: 13 TKRKIEIKKRETKEQRAVTCSKRRQTVFSKAADLCLISGANIAVFVTSPSDSSDVVYSFS 72
Query: 66 GYPSVSSVANRFLANAP 82
GY S +A+ +L P
Sbjct: 73 GYSSAYEIADCYLNRKP 89
>AT3G66656.1 | chr3:2091262-2091798 REVERSE LENGTH=179
Length = 178
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 10 RKKIEIKR-GDKKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
R+KI++++ D + FSKR +F KA+ELA LC V +V SP +SFG P
Sbjct: 3 RRKIKMEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSP--GNKPYSFGKP 60
Query: 69 SVSSVANRF 77
+ +A RF
Sbjct: 61 NFDVIAERF 69
>AT1G65360.1 | chr1:24281337-24282151 FORWARD LENGTH=227
Length = 226
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 10 RKKIEIKRGDKKVR-DACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
R+K+EI + K+ FSKR +F KA+E LC +A++ SP G +FSFG+P
Sbjct: 8 RRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSP--AGKVFSFGHP 65
Query: 69 SVSSVANRF--LANAPNNTSVSSS 90
+V + + F NNT++ S
Sbjct: 66 NVDVLLDHFRGCVVGHNNTNLDES 89
>AT1G01530.1 | chr1:192640-193662 REVERSE LENGTH=248
Length = 247
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 4 CRARTTRKKIE-IKRGDKKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGI 62
R R+KIE +K ++ FSKR + +F K +EL LC +A++ SP +G
Sbjct: 2 ARKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSP--SGKA 59
Query: 63 FSFGYPSVSSVANRFLANA--PNNTSVSSS 90
+SFG+P+V+ + + L NNT+ + S
Sbjct: 60 YSFGHPNVNKLLDHSLGRVIRHNNTNFAES 89
>AT1G28450.1 | chr1:10003966-10004523 FORWARD LENGTH=186
Length = 185
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 10 RKKIEIKRGDK-KVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
++KI IK+ +K + R SKR I+ EL+ILCGV VA F+ + +G ++FG P
Sbjct: 9 KQKINIKKIEKDEDRSVTLSKRLNAIYTMIIELSILCGVEVA--FIGYSCSGKPYTFGSP 66
Query: 69 SVSSVANRFL 78
S +V RFL
Sbjct: 67 SFQAVVERFL 76
>AT5G10140.1 | chr5:3173724-3179339 REVERSE LENGTH=197
Length = 196
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 10 RKKIEIKR-GDKKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSF 65
RKK+EIKR +K R FSKR + KA +L++LC VA++ VS A+G ++SF
Sbjct: 3 RKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVS--ASGKLYSF 57
>AT1G22130.1 | chr1:7812387-7814259 REVERSE LENGTH=336
Length = 335
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 10 RKKIEIKRGDKKV-RDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
R K+EIKR + R FSKR + KA EL+ILC + +A++ SP+ +FS G
Sbjct: 3 RVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFS-GKT 61
Query: 69 SVSSVANRFLANAPNNTSVSS 89
+ V +RF+ N P S+
Sbjct: 62 RIEDVFSRFI-NLPKQERESA 81
>AT3G57230.1 | chr3:21177710-21180671 FORWARD LENGTH=241
Length = 240
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 10 RKKIEIKR-GDKKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
R KI IKR + R FSKR + KA ELAILC V V+ S + G ++ F
Sbjct: 3 RGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFS--STGRLYDFSSS 60
Query: 69 SVSSVANRFLANAPNNTS 86
S+ SV R+ ++A TS
Sbjct: 61 SMKSVIERY-SDAKGETS 77
>AT1G72350.1 | chr1:27239273-27239947 REVERSE LENGTH=225
Length = 224
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 10 RKKIEIKRGDKKVR-DACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
R+KIEIK + R FSKR + +F KA EL++LCG + ++ S I+SFG
Sbjct: 44 RQKIEIKEIMLETRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFS--RCDRIYSFG-- 99
Query: 69 SVSSVANRFLANAP 82
+V+S+ +++L AP
Sbjct: 100 NVNSLIDKYLRKAP 113
>AT2G45650.1 | chr2:18804453-18806291 FORWARD LENGTH=253
Length = 252
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 10 RKKIEIKRGDKKV-RDACFSKRHTTIFNKANELAILCGVMVAVVFVSPNANGGIFSFGYP 68
R ++E+KR + K+ R FSKR + KA EL++LC VA++ S + G ++ FG
Sbjct: 3 RGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS--SRGKLYEFGSV 60
Query: 69 SVSSVANRF 77
+ S R+
Sbjct: 61 GIESTIERY 69
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,404,464
Number of extensions: 113748
Number of successful extensions: 350
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 21
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)