Os03g0253100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphomevalonate kinase Erg8 family protein.
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Os03g0253100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphomevalonate kinase Erg8 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.42 | 0.337 | 10.8 | -1.11 | 0.195 | -0.128 | -0.324 | -3.68 | 0.311 | 22.4 | 30.3 | 234 | -- | -- |
| 52.22 | 0.337 | 10.8 | -0.83 | 0.199 | -0.487 | -0.38 | -- | 0.319 | 22.4 | 30.2 | 233 | -- | -- |
| 51.82 | 0.335 | 10.8 | -1.1 | 0.197 | -0.121 | -- | -3.71 | 0.312 | 22.7 | 30.3 | 242 | -- | -- |
| 52.55 | 0.338 | 10.8 | -0.806 | 0.195 | -0.534 | -- | -- | 0.318 | 22.6 | 30.3 | 231 | -- | -- |
| 54.21 | 0.343 | 10.8 | -1.09 | -- | -0.119 | -- | -3.59 | 0.315 | -- | 30.3 | 228 | -- | -- |
| 59.09 | 0.36 | 10.8 | -0.877 | 0.232 | -- | 0.0165 | -- | 0.357 | 1.61 | -- | -- | -- | -- |
| 59.1 | 0.36 | 10.8 | -0.877 | 0.232 | -- | -- | -- | 0.357 | 1.56 | -- | -- | -- | -- |
| 54.88 | 0.345 | 10.8 | -0.801 | -- | -0.502 | -- | -- | 0.332 | -- | 29.93 | 221 | -- | -- |
| 69.35 | 0.388 | 10.8 | -- | 0.204 | -0.655 | -- | -- | 0.399 | 21.7 | 30.28 | 231 | -- | -- |
| 62.38 | 0.369 | 10.8 | -0.868 | -- | -- | -- | -- | 0.362 | -- | -- | -- | -- | -- |
| 79.38 | 0.417 | 10.8 | -- | 0.216 | -- | -- | -- | 0.455 | 1.43 | -- | -- | -- | -- |
| 71.54 | 0.394 | 10.8 | -- | -- | -0.592 | -- | -- | 0.415 | -- | 29.93 | 224 | -- | -- |
| 82.26 | 0.423 | 10.8 | -- | -- | -- | -- | -- | 0.459 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.45 | temperature | 15 | 30 | > th | dose dependent | rect. | 20 | 10 |
| 3 | 50.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 15 |
| 8 | 50.68 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 16 | 50.74 | temperature | 25 | 720 | > th | dose dependent | sin | 4 | NA |
| 52 | 51.04 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 55 | 51.10 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 23 |
| 58 | 51.13 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 10 |
| 62 | 51.16 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |
| 64 | 51.17 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 80 | 51.18 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 100 | 51.28 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 106 | 51.31 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 9 |
| 132 | 51.35 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 139 | 51.37 | temperature | 30 | 270 | < th | dose independent | sin | 3 | NA |
| 140 | 51.38 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 141 | 51.39 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 144 | 51.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 151 | 51.43 | temperature | 30 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 193 | 51.55 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 23 |
| 194 | 51.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 208 | 51.58 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 320 | 51.63 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 23 |
| 327 | 51.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 2 |
| 329 | 51.65 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 332 | 51.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 335 | 51.67 | temperature | 15 | 10 | > th | dose independent | rect. | 20 | 10 |
| 336 | 51.67 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 13 |
| 339 | 51.68 | temperature | 15 | 720 | > th | dose independent | rect. | 7 | 14 |
| 346 | 51.70 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 372 | 51.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 418 | 51.80 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 20 |
| 424 | 51.83 | temperature | 15 | 720 | > th | dose independent | rect. | 9 | 12 |
| 433 | 51.84 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 9 |
| 441 | 51.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 460 | 51.86 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 486 | 51.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 487 | 51.89 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 23 |
| 522 | 51.93 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 542 | 51.95 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 16 |
| 547 | 51.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 556 | 51.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 563 | 52.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 14 |
| 586 | 52.03 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 16 |
| 606 | 52.07 | temperature | 15 | 720 | > th | dose dependent | sin | 19 | NA |
| 615 | 52.09 | temperature | 15 | 30 | > th | dose independent | rect. | 9 | 21 |
| 620 | 52.10 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 20 | 10 |
| 621 | 52.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 641 | 52.14 | temperature | 15 | 720 | > th | dose independent | rect. | 9 | 10 |
| 666 | 52.18 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 14 |
| 673 | 52.19 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 8 |
| 694 | 52.21 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 16 |
| 695 | 52.21 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 710 | 52.23 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 729 | 52.28 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |
| 735 | 52.30 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 1 |
| 758 | 52.33 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 784 | 52.36 | radiation | 1 | 720 | < th | dose dependent | sin | 19 | NA |
| 828 | 52.39 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 18 |
| 829 | 52.39 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 835 | 52.40 | temperature | 15 | 270 | > th | dose independent | rect. | 18 | 11 |
| 873 | 52.46 | temperature | 15 | 10 | > th | dose independent | rect. | 9 | 23 |
| 991 | 52.50 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 1 |