Os03g0248600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2) (2-phospho- D-glycerate hydro-lyase 2).
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Os03g0248600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2) (2-phospho- D-glycerate hydro-lyase 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.02 | 0.352 | 12.6 | -1.34 | 0.432 | -1.36 | -0.288 | -1.43 | -0.461 | 18.6 | 21 | 4097 | -- | -- |
| 56.2 | 0.349 | 12.5 | -1.13 | 0.447 | -1.09 | -0.345 | -- | -0.374 | 18.5 | 21.8 | 3620 | -- | -- |
| 55 | 0.345 | 12.5 | -1.37 | 0.47 | -1.22 | -- | -1.09 | -0.462 | 18.8 | 21.5 | 3588 | -- | -- |
| 56.24 | 0.349 | 12.5 | -1.12 | 0.462 | -1.09 | -- | -- | -0.372 | 18.9 | 21.79 | 3620 | -- | -- |
| 65.67 | 0.377 | 12.5 | -1.36 | -- | -1.22 | -- | -1.04 | -0.441 | -- | 21.5 | 4052 | -- | -- |
| 88.79 | 0.442 | 12.6 | -1.75 | 0.45 | -- | -0.483 | -- | -0.752 | 18.1 | -- | -- | -- | -- |
| 89.28 | 0.442 | 12.6 | -1.74 | 0.449 | -- | -- | -- | -0.754 | 18.4 | -- | -- | -- | -- |
| 67.01 | 0.381 | 12.5 | -1.1 | -- | -1.1 | -- | -- | -0.373 | -- | 21.78 | 4023 | -- | -- |
| 60.96 | 0.364 | 12.4 | -- | 0.443 | -1.6 | -- | -- | -0.132 | 18.7 | 19.26 | 47520 | -- | -- |
| 99.74 | 0.467 | 12.6 | -1.75 | -- | -- | -- | -- | -0.764 | -- | -- | -- | -- | -- |
| 169.35 | 0.609 | 12.5 | -- | 0.473 | -- | -- | -- | -0.56 | 18.2 | -- | -- | -- | -- |
| 71.11 | 0.393 | 12.4 | -- | -- | -1.63 | -- | -- | -0.148 | -- | 19 | 47520 | -- | -- |
| 180.96 | 0.628 | 12.5 | -- | -- | -- | -- | -- | -0.569 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.10 | radiation | 30 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 2 | 51.26 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 3 | 51.26 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 4 | 51.28 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 5 | 51.41 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 20 | 51.42 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 35 | 51.47 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 37 | 51.67 | radiation | 40 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 39 | 51.71 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 43 | 51.76 | radiation | 40 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 46 | 51.77 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 53 | 52.00 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 56 | 52.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 59 | 52.33 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 60 | 52.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 61 | 52.39 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 73 | 52.41 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 75 | 52.42 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 80 | 52.44 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 82 | 52.44 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 83 | 52.46 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 5 |
| 86 | 52.46 | radiation | 1 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 89 | 52.48 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 92 | 52.48 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 136 | 52.67 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 141 | 52.76 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 147 | 52.84 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 3 |
| 149 | 52.87 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 153 | 52.90 | temperature | 15 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 187 | 53.00 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 212 | 53.07 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 216 | 53.10 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 243 | 53.25 | radiation | 10 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 249 | 53.25 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 250 | 53.25 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 257 | 53.26 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 266 | 53.28 | radiation | 40 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 272 | 53.30 | radiation | 30 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 301 | 53.36 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 325 | 53.42 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 346 | 53.50 | radiation | 10 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 382 | 53.58 | radiation | 40 | 43200 | < th | dose dependent | rect. | 16 | 15 |
| 515 | 53.82 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 540 | 53.91 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 567 | 53.96 | humidity | 90 | 43200 | > th | dose dependent | sin | 9 | NA |
| 569 | 53.96 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 592 | 54.00 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 614 | 54.06 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 16 |
| 640 | 54.11 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 686 | 54.18 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 734 | 54.28 | humidity | 60 | 43200 | < th | dose dependent | sin | 9 | NA |
| 804 | 54.41 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 842 | 54.48 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 860 | 54.49 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 861 | 54.50 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 868 | 54.50 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 879 | 54.56 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 881 | 54.56 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 889 | 54.58 | temperature | 15 | 43200 | > th | dose independent | sin | 8 | NA |
| 891 | 54.58 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 970 | 54.67 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 988 | 54.70 | radiation | 10 | 43200 | < th | dose dependent | sin | 12 | NA |
| 989 | 54.70 | radiation | 40 | 43200 | < th | dose dependent | rect. | 16 | 1 |