BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0248600 Os03g0248600|AK073611
(445 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36530.1 | chr2:15321081-15323786 REVERSE LENGTH=445 813 0.0
AT1G74030.1 | chr1:27839465-27841901 REVERSE LENGTH=478 597 e-171
AT2G29560.1 | chr2:12646635-12649694 FORWARD LENGTH=476 477 e-135
>AT2G36530.1 | chr2:15321081-15323786 REVERSE LENGTH=445
Length = 444
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/443 (88%), Positives = 417/443 (94%)
Query: 3 ATIQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDGGSDYLGK 62
ATI VKARQIFDSRGNPTVEVDI S+G AAVPSGASTG+YEALELRDGGSDYLGK
Sbjct: 2 ATITVVKARQIFDSRGNPTVEVDIHTSNGIKVTAAVPSGASTGIYEALELRDGGSDYLGK 61
Query: 63 GVLKAVDNVNSIIGPALIGKDPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVSL 122
GV KAV NVN+IIGPALIGKDPT+QT IDNFMV +LDGT+NEWGWCKQKLGANAILAVSL
Sbjct: 62 GVSKAVGNVNNIIGPALIGKDPTQQTAIDNFMVHELDGTQNEWGWCKQKLGANAILAVSL 121
Query: 123 ALCKAGAIIKKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQEFMILPTGAS 182
A+CKAGA++ IPLY+HIANLAGN ++VLPVPAFNVINGGSHAGNKLAMQEFMILP GA+
Sbjct: 122 AVCKAGAVVSGIPLYKHIANLAGNPKIVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAA 181
Query: 183 SFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGY 242
SFKEAMKMGVEVYH+LKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGY
Sbjct: 182 SFKEAMKMGVEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGY 241
Query: 243 TGKVVIGMDVAASEFYTEDQTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVSIED 302
TGKVVIGMDVAASEFY+ED+TYDLNFKEENN+GSQKISGD+LK++YKSFV+EYPIVSIED
Sbjct: 242 TGKVVIGMDVAASEFYSEDKTYDLNFKEENNNGSQKISGDALKDLYKSFVAEYPIVSIED 301
Query: 303 PFDQDDWVHYAKMTEEIGDQVQIVGDDLLVTNPTRVAKAIKDKACNALLLKVNQIGSVTE 362
PFDQDDW HYAKMT E G +VQIVGDDLLVTNP RVAKAI +K+CNALLLKVNQIGSVTE
Sbjct: 302 PFDQDDWEHYAKMTTECGTEVQIVGDDLLVTNPKRVAKAIAEKSCNALLLKVNQIGSVTE 361
Query: 363 SIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLR 422
SIEAVKMSK+AGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLR
Sbjct: 362 SIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLR 421
Query: 423 IEEELGAAAVYAGAKFRAPVEPY 445
IEEELG+ A+YAG FR PVEPY
Sbjct: 422 IEEELGSEAIYAGVNFRKPVEPY 444
>AT1G74030.1 | chr1:27839465-27841901 REVERSE LENGTH=478
Length = 477
Score = 597 bits (1540), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/438 (67%), Positives = 351/438 (80%), Gaps = 12/438 (2%)
Query: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDGG-SDYLGKG 63
++ VKARQI DSRGNPTVEVD+ D R+AVPSGASTG+YEALELRDG S Y GKG
Sbjct: 51 VKGVKARQIIDSRGNPTVEVDLITDD--LYRSAVPSGASTGIYEALELRDGDKSVYGGKG 108
Query: 64 VLKAVDNVNSIIGPALIGKDPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVSLA 123
VL+A+ N+N ++ P LIG D Q +D M++ LDGT N K KLGANAIL VSL+
Sbjct: 109 VLQAIKNINELVAPKLIGVDVRNQADVDALMLE-LDGTPN-----KSKLGANAILGVSLS 162
Query: 124 LCKAGAIIKKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQEFMILPTGASS 183
+C+AGA K +PLY+HI +G K+LV+PVPAFNVINGGSHAGN LAMQEFMILP GA+S
Sbjct: 163 VCRAGAGAKGVPLYKHIQETSGTKELVMPVPAFNVINGGSHAGNSLAMQEFMILPVGATS 222
Query: 184 FKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYT 243
F EA +MG EVYH LK +IK KYGQDA NVGDEGGFAPN+Q+N+EGL LL AIEKAGYT
Sbjct: 223 FSEAFQMGSEVYHTLKGIIKTKYGQDACNVGDEGGFAPNVQDNREGLVLLIDAIEKAGYT 282
Query: 244 GKVVIGMDVAASEFYTEDQTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVSIEDP 303
GK+ IGMDVAASEF+ +D YDLNFK++ NDG+ +S +SL ++Y+ F+ ++PIVSIEDP
Sbjct: 283 GKIKIGMDVAASEFFMKDGRYDLNFKKQPNDGAHVLSAESLADLYREFIKDFPIVSIEDP 342
Query: 304 FDQDDWVHYAKMTEEIGDQVQIVGDDLLVTNPTRVAKAIKDKACNALLLKVNQIGSVTES 363
FDQDDW +A + + +Q+VGDDLLVTNP R+A+AIK ++CNALLLKVNQIG+VTES
Sbjct: 343 FDQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIKKQSCNALLLKVNQIGTVTES 400
Query: 364 IEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRI 423
I+A SK AGWGVM SHRSGETED FIADL+VGL++GQIKTGAPCRSERL+KYNQLLRI
Sbjct: 401 IQAALDSKAAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLSKYNQLLRI 460
Query: 424 EEELGAAAVYAGAKFRAP 441
EEELG YAG FR+P
Sbjct: 461 EEELGNVR-YAGEAFRSP 477
>AT2G29560.1 | chr2:12646635-12649694 FORWARD LENGTH=476
Length = 475
Score = 477 bits (1228), Expect = e-135, Method: Compositional matrix adjust.
Identities = 248/440 (56%), Positives = 316/440 (71%), Gaps = 11/440 (2%)
Query: 1 MAATIQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDGGSD-Y 59
+++ I VKARQI DSRG PTVEVD+ + G F RA+VPSG S+G YEA+ELRDG Y
Sbjct: 43 VSSVITKVKARQILDSRGIPTVEVDLHTNKGVF-RASVPSGDSSGTYEAIELRDGDKGMY 101
Query: 60 LGKGVLKAVDNVNSIIGPALIGKDPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILA 119
LG V KAV N+N I ALIG DP Q ID M+ LD T+ K +LGANAILA
Sbjct: 102 LGNSVAKAVKNINEKISEALIGMDPKLQGQIDQAMID-LDKTEK-----KSELGANAILA 155
Query: 120 VSLALCKAGAIIKKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQEFMILPT 179
VS+A CKAGA K++PL +H+++L+G +VLPVPAF V++GG HA N A+QE MILP
Sbjct: 156 VSIAACKAGAAEKEVPLCKHLSDLSGRANMVLPVPAFTVLSGGKHASNTFAIQEIMILPI 215
Query: 180 GASSFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEK 239
GAS F+EA++ G E YH+LK+VI +K G NVG++GG AP+I KEGLEL+K AI +
Sbjct: 216 GASRFEEALQWGSETYHHLKAVISEKNGGLGCNVGEDGGLAPDISSLKEGLELVKEAINR 275
Query: 240 AGYTGKVVIGMDVAASEFYTEDQTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVS 299
GY K+ I +D+AA+ F + YDL+ K N G S + + ++YK ++YPIVS
Sbjct: 276 TGYNDKIKIAIDIAATNFCLGTK-YDLDIKSPNKSGQNFKSAEDMIDMYKEICNDYPIVS 334
Query: 300 IEDPFDQDDWVHYAKMTEEIGDQVQIVGDDLLVTNPTRVAKAIKDKACNALLLKVNQIGS 359
IEDPFD++DW H K +G Q+VGDDLL++N RV +AI++ +CNALLLKVNQIG+
Sbjct: 335 IEDPFDKEDWEH-TKYFSSLG-ICQVVGDDLLMSNSKRVERAIQESSCNALLLKVNQIGT 392
Query: 360 VTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQ 419
VTE+IE VKM++ A WGV+TSHR GETED+FI+DL+VGL+TG IK GAPCR ER KYNQ
Sbjct: 393 VTEAIEVVKMARDAQWGVVTSHRCGETEDSFISDLSVGLATGVIKAGAPCRGERTMKYNQ 452
Query: 420 LLRIEEELGAAAVYAGAKFR 439
LLRIEEELG AVYAG ++
Sbjct: 453 LLRIEEELGDQAVYAGEDWK 472
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,372,355
Number of extensions: 402533
Number of successful extensions: 791
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 3
Length of query: 445
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 343
Effective length of database: 8,310,137
Effective search space: 2850376991
Effective search space used: 2850376991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)