Os03g0248000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Autophagy protein Apg9 family protein.
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Os03g0248000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Autophagy protein Apg9 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.54 | 0.276 | 10.7 | -0.154 | 0.381 | -0.38 | 0.317 | 1.95 | -0.261 | 5.68 | 9.99 | 1452 | -- | -- |
| 40.96 | 0.298 | 10.7 | -0.158 | 0.383 | -0.374 | 0.397 | -- | -0.263 | 5.75 | 10 | 1445 | -- | -- |
| 34.77 | 0.275 | 10.7 | -0.15 | 0.383 | -0.38 | -- | 1.96 | -0.262 | 5.61 | 9.994 | 1465 | -- | -- |
| 41.14 | 0.299 | 10.7 | -0.158 | 0.382 | -0.376 | -- | -- | -0.263 | 5.86 | 10 | 1445 | -- | -- |
| 42.39 | 0.303 | 10.7 | -0.132 | -- | -0.374 | -- | 1.87 | -0.256 | -- | 10 | 1444 | -- | -- |
| 44.48 | 0.313 | 10.7 | -0.156 | 0.377 | -- | 0.328 | -- | -0.2 | 5.86 | -- | -- | -- | -- |
| 44.74 | 0.313 | 10.7 | -0.153 | 0.379 | -- | -- | -- | -0.201 | 5.92 | -- | -- | -- | -- |
| 48.01 | 0.323 | 10.7 | -0.0872 | -- | -0.367 | -- | -- | -0.238 | -- | 9.999 | 1442 | -- | -- |
| 41.33 | 0.299 | 10.7 | -- | 0.382 | -0.376 | -- | -- | -0.263 | 5.86 | 9.997 | 1444 | -- | -- |
| 52.17 | 0.337 | 10.7 | -0.142 | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
| 45.36 | 0.315 | 10.7 | -- | 0.376 | -- | -- | -- | -0.184 | 5.94 | -- | -- | -- | -- |
| 48.16 | 0.323 | 10.7 | -- | -- | -0.413 | -- | -- | -0.238 | -- | 9.99 | 1442 | -- | -- |
| 52.7 | 0.339 | 10.7 | -- | -- | -- | -- | -- | -0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 31.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 5 | 31.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 7 | 31.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 9 | 31.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 15 | 31.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 32 | 31.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 56 | 32.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 136 | 32.92 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 137 | 32.93 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 154 | 33.05 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 159 | 33.06 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 203 | 33.21 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 242 | 33.48 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 248 | 33.53 | radiation | 10 | 1440 | < th | dose independent | sin | 14 | NA |
| 250 | 33.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 251 | 33.54 | radiation | 40 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 256 | 33.56 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 279 | 33.61 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 282 | 33.61 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 325 | 33.82 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 339 | 33.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 344 | 33.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 345 | 33.91 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 351 | 33.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 357 | 33.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 366 | 33.97 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 374 | 33.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 409 | 34.06 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 497 | 34.24 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 500 | 34.25 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 521 | 34.28 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 527 | 34.29 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 532 | 34.30 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 566 | 34.34 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 568 | 34.34 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 575 | 34.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 583 | 34.35 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 589 | 34.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 691 | 34.45 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 698 | 34.45 | temperature | 15 | 43200 | < th | dose dependent | sin | 7 | NA |
| 699 | 34.45 | temperature | 15 | 43200 | < th | dose dependent | sin | 5 | NA |
| 757 | 34.49 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 793 | 34.51 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 852 | 34.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 884 | 34.54 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 1000 | 34.57 | radiation | 10 | 1440 | < th | dose independent | rect. | 5 | 14 |