Os03g0247000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Clp, N terminal domain containing protein.
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Os03g0247000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Clp, N terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.01 | 0.308 | 12.5 | -0.154 | 0.512 | 1.04 | -0.299 | -0.0786 | -0.387 | 20.6 | 24.21 | 12 | -- | -- |
| 43.01 | 0.305 | 12.5 | -0.143 | 0.512 | 1.03 | -0.295 | -- | -0.384 | 20.5 | 24.2 | 12 | -- | -- |
| 43.29 | 0.306 | 12.5 | -0.129 | 0.512 | 1.02 | -- | 0.0336 | -0.381 | 20.5 | 24.2 | 12 | -- | -- |
| 43.29 | 0.306 | 12.5 | -0.132 | 0.514 | 1.02 | -- | -- | -0.383 | 20.5 | 24.2 | 12 | -- | -- |
| 52.77 | 0.338 | 12.5 | -0.183 | -- | 1.06 | -- | -0.113 | -0.393 | -- | 24.1 | 249 | -- | -- |
| 59.39 | 0.361 | 12.5 | 0.0392 | 0.692 | -- | 0.205 | -- | -0.262 | 18 | -- | -- | -- | -- |
| 59.48 | 0.361 | 12.5 | 0.0371 | 0.693 | -- | -- | -- | -0.262 | 18.1 | -- | -- | -- | -- |
| 52.78 | 0.338 | 12.5 | -0.16 | -- | 1.06 | -- | -- | -0.385 | -- | 24.1 | 254 | -- | -- |
| 43.73 | 0.308 | 12.5 | -- | 0.512 | 0.988 | -- | -- | -0.365 | 20.3 | 24.32 | 12 | -- | -- |
| 84.38 | 0.429 | 12.5 | 0.0172 | -- | -- | -- | -- | -0.277 | -- | -- | -- | -- | -- |
| 59.52 | 0.361 | 12.5 | -- | 0.693 | -- | -- | -- | -0.266 | 18.1 | -- | -- | -- | -- |
| 53.41 | 0.34 | 12.5 | -- | -- | 1.03 | -- | -- | -0.365 | -- | 24.1 | 254 | -- | -- |
| 84.39 | 0.429 | 12.5 | -- | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.37 | temperature | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 3 | 41.76 | temperature | 20 | 10 | > th | dose dependent | sin | 0 | NA |
| 37 | 42.65 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 14 |
| 41 | 42.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 50 | 42.83 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 52 | 42.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 55 | 42.90 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 56 | 42.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 58 | 42.92 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 60 | 42.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 61 | 43.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 64 | 43.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 65 | 43.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 77 | 43.09 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 86 | 43.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 91 | 43.16 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 97 | 43.17 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 106 | 43.22 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 170 | 43.51 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 227 | 43.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 271 | 43.88 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 283 | 43.96 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 286 | 43.97 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 13 |
| 323 | 44.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 349 | 44.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 365 | 44.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 458 | 44.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 566 | 44.86 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 587 | 44.91 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 604 | 44.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 645 | 45.03 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 698 | 45.14 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 7 |
| 766 | 45.30 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 9 |
| 823 | 45.42 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 980 | 45.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |