BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0247000 Os03g0247000|AK100847
(232 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25370.1 | chr4:12972747-12974580 FORWARD LENGTH=239 211 3e-55
AT4G12060.1 | chr4:7228269-7229898 REVERSE LENGTH=242 211 4e-55
AT5G50920.1 | chr5:20715710-20719800 REVERSE LENGTH=930 60 9e-10
AT3G48870.1 | chr3:18122363-18126008 REVERSE LENGTH=953 59 3e-09
AT3G45450.1 | chr3:16673146-16674880 FORWARD LENGTH=342 53 1e-07
>AT4G25370.1 | chr4:12972747-12974580 FORWARD LENGTH=239
Length = 238
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 130/169 (76%)
Query: 62 AAVVAQLPTANPEVASGEKKIRWSSRAVRSFAMAELEARKMRYPTTGTEGLLMGILVEGT 121
A+ V +P A PE S +K +WS+RA++S AM ELEARK++YP+TGTE +LMGILVEGT
Sbjct: 64 ASTVLNVPIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMGILVEGT 123
Query: 122 SDAAKLLRANGITLLKVREEAANVLGKSEMFYFSPMHPPLTEAAQRALDWAINEKLKSGE 181
S AK LR NG+TL KVR+E ++LGKS+M++FSP HPPLTE AQ+A+ WAI+EK KS
Sbjct: 124 STVAKFLRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDEKNKSDV 183
Query: 182 DGEVTANHLLLGIWSDKESAGHKVLASLGFDDERANSLAKTAGEEAAMS 230
DGE+T +LLLG+WS K+SAG ++L LGF++++A + K+ E+ +S
Sbjct: 184 DGELTTAYLLLGVWSQKDSAGRQILEKLGFNEDKAKEVEKSMNEDVDLS 232
>AT4G12060.1 | chr4:7228269-7229898 REVERSE LENGTH=242
Length = 241
Score = 211 bits (536), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/190 (56%), Positives = 137/190 (72%), Gaps = 2/190 (1%)
Query: 37 VLPASLRAAAAGSPTSASRSRGRGVAAVVAQLPTANPE-VASGEKKIRWSSRAVRSFAMA 95
V+ +SL + S +R R R + ++ LPTANP+ V S KK +WS RA++SFAM
Sbjct: 47 VVDSSLSLTSPVSALQTNRPR-RIHKSAISSLPTANPDLVVSDAKKPKWSWRAIKSFAMG 105
Query: 96 ELEARKMRYPTTGTEGLLMGILVEGTSDAAKLLRANGITLLKVREEAANVLGKSEMFYFS 155
ELEARK++YP TGTE LLMGIL+EGTS +K LRAN I L KVREE +LGK++M++FS
Sbjct: 106 ELEARKLKYPNTGTEALLMGILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFS 165
Query: 156 PMHPPLTEAAQRALDWAINEKLKSGEDGEVTANHLLLGIWSDKESAGHKVLASLGFDDER 215
P HPPLTE AQRALD A+++ LK+G GEV H+LLGIWS+ ES GHK+LA+LGF DE+
Sbjct: 166 PEHPPLTEDAQRALDSALDQNLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEK 225
Query: 216 ANSLAKTAGE 225
+ L A E
Sbjct: 226 SKELESFASE 235
>AT5G50920.1 | chr5:20715710-20719800 REVERSE LENGTH=930
Length = 929
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 83 RWSSRAVRSFAMAELEARKMRYPTTGTEGLLMGILVEGTSDAAKLLRANGITLLKVREEA 142
R++ +A++ +A+ EAR++ + GTE +L+G++ EGT AAK+L++ GI L R E
Sbjct: 97 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 156
Query: 143 ANVLGKSEMFYFSPMHPPLTEAAQRALDWAINEKLKSGED 182
++G+ F + P T A+R L+ ++ E + G +
Sbjct: 157 EKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHN 194
>AT3G48870.1 | chr3:18122363-18126008 REVERSE LENGTH=953
Length = 952
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 83 RWSSRAVRSFAMAELEARKMRYPTTGTEGLLMGILVEGTSDAAKLLRANGITLLKVREEA 142
R++ +A++ +++ EAR++ + GTE +L+G++ EGT AAK+L++ GI L R E
Sbjct: 117 RFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEV 176
Query: 143 ANVLGKSEMFYFSPMHPPLTEAAQRALDWAINEKLKSGED 182
++G+ F + P T A+R L+ ++ E + G +
Sbjct: 177 EKIIGRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHN 214
>AT3G45450.1 | chr3:16673146-16674880 FORWARD LENGTH=342
Length = 341
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 83 RWSSRAVRSFAMAELEARKMRYPTTGTEGLLMGILVEGTSDAAKLLRANGITLLKVREEA 142
R++ +A++ +A+ EAR++ Y GTE +L+ ++ EGT AAK+L++ GI L R E
Sbjct: 4 RFTEKAIKVITLAQEEARRLGYNFFGTEHILLSLIGEGTGIAAKVLKSMGINLKDARVEV 63
Query: 143 ANVLGKSEMFY-----FSP 156
++G+ F F+P
Sbjct: 64 EKIIGRGSGFVVVEIPFTP 82
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.128 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,942,173
Number of extensions: 143766
Number of successful extensions: 430
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 5
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)