Os03g0243100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Actin-depolymerizing factor 5 (ADF-5) (AtADF5).
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Os03g0243100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Actin-depolymerizing factor 5 (ADF-5) (AtADF5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.11 | 0.433 | 12.6 | -1.85 | 0.725 | -1.29 | -0.349 | -0.522 | -0.669 | 20.9 | 25.25 | 1159 | -- | -- |
| 85.01 | 0.429 | 12.6 | -1.79 | 0.701 | -1.21 | -0.363 | -- | -0.69 | 20.5 | 25.51 | 2592 | -- | -- |
| 85.41 | 0.43 | 12.6 | -1.83 | 0.749 | -1.3 | -- | -0.498 | -0.683 | 20.7 | 25.4 | 1139 | -- | -- |
| 84.88 | 0.429 | 12.6 | -1.71 | 0.706 | -1.28 | -- | -- | -0.7 | 20.3 | 26 | 2535 | -- | -- |
| 110.15 | 0.489 | 12.6 | -1.85 | -- | -1.14 | -- | -0.542 | -0.592 | -- | 23.74 | 2813 | -- | -- |
| 145.12 | 0.565 | 12.6 | -2.1 | 0.628 | -- | 0.483 | -- | -0.764 | 18.8 | -- | -- | -- | -- |
| 145.38 | 0.565 | 12.6 | -2.11 | 0.631 | -- | -- | -- | -0.764 | 19.3 | -- | -- | -- | -- |
| 108.19 | 0.484 | 12.6 | -1.67 | -- | -1.11 | -- | -- | -0.519 | -- | 25.94 | 7045 | -- | -- |
| 103.63 | 0.474 | 12.4 | -- | 0.633 | -1.91 | -- | -- | 0.127 | 19.6 | 18.1 | 47520 | -- | -- |
| 166.47 | 0.603 | 12.6 | -2.13 | -- | -- | -- | -- | -0.775 | -- | -- | -- | -- | -- |
| 263.19 | 0.759 | 12.6 | -- | 0.652 | -- | -- | -- | -0.528 | 19.1 | -- | -- | -- | -- |
| 125.14 | 0.521 | 12.4 | -- | -- | -1.91 | -- | -- | 0.118 | -- | 18.03 | 47520 | -- | -- |
| 285.61 | 0.789 | 12.6 | -- | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 18 |
| 2 | 87.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 18 | 87.74 | temperature | 25 | 1440 | > th | dose dependent | sin | 7 | NA |
| 45 | 88.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 61 | 88.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 86 | 88.44 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 93 | 88.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 104 | 88.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 274 | 89.44 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 288 | 89.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 327 | 90.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 330 | 90.12 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 340 | 90.18 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 377 | 90.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 381 | 90.75 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 383 | 90.75 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 393 | 90.81 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 409 | 90.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 412 | 90.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 421 | 90.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 422 | 90.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 428 | 90.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 433 | 90.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 435 | 90.90 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 453 | 90.99 | temperature | 30 | 1440 | > th | dose independent | sin | 0 | NA |
| 454 | 90.99 | temperature | 30 | 1440 | < th | dose independent | sin | 2 | NA |
| 457 | 90.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 467 | 91.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 481 | 91.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 482 | 91.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 490 | 91.10 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 589 | 91.11 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 594 | 91.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 600 | 91.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 601 | 91.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 603 | 91.11 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 622 | 91.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 632 | 91.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 639 | 91.12 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 640 | 91.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 649 | 91.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 650 | 91.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 668 | 91.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 706 | 91.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 714 | 91.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 718 | 91.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 724 | 91.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 766 | 91.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 12 |
| 877 | 91.35 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |