Os03g0242200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ras GTPase family protein.
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Os03g0242200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ras GTPase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.05 | 0.649 | 6.1 | -0.609 | 0.733 | -0.035 | -1.24 | 9.41 | -0.817 | 14.1 | 29.12 | 1348 | -- | -- |
| 198 | 0.655 | 6.31 | -2.36 | 0.608 | 1.29 | -1.62 | -- | -0.889 | 13.5 | 29.66 | 1894 | -- | -- |
| 195.75 | 0.652 | 6.1 | -0.656 | 0.766 | -0.0266 | -- | 10.1 | -0.815 | 13.8 | 29.01 | 1165 | -- | -- |
| 204.82 | 0.667 | 6.31 | -2.47 | 0.644 | 1.34 | -- | -- | -0.907 | 13.3 | 29.6 | 1865 | -- | -- |
| 224.29 | 0.698 | 6.13 | -0.812 | -- | -0.0271 | -- | 11.5 | -0.87 | -- | 29.3 | 1842 | -- | -- |
| 248.51 | 0.739 | 6.35 | -2.14 | 0.593 | -- | -1.55 | -- | -1.08 | 14.1 | -- | -- | -- | -- |
| 257.5 | 0.751 | 6.35 | -2.19 | 0.589 | -- | -- | -- | -1.09 | 13.8 | -- | -- | -- | -- |
| 229.56 | 0.706 | 6.33 | -2.5 | -- | 1.28 | -- | -- | -0.99 | -- | 28.78 | 1807 | -- | -- |
| 359.33 | 0.883 | 6.26 | -- | 0.65 | 0.881 | -- | -- | -0.693 | 13.7 | 31.16 | 1842 | -- | -- |
| 278.49 | 0.78 | 6.36 | -2.21 | -- | -- | -- | -- | -1.11 | -- | -- | -- | -- | -- |
| 383.38 | 0.916 | 6.3 | -- | 0.629 | -- | -- | -- | -0.85 | 13.9 | -- | -- | -- | -- |
| 385.71 | 0.915 | 6.28 | -- | -- | 0.663 | -- | -- | -0.778 | -- | 30.29 | 6116 | -- | -- |
| 407.27 | 0.942 | 6.3 | -- | -- | -- | -- | -- | -0.862 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 4 | 191.88 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 5 | 192.01 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 7 | 192.04 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 8 | 192.05 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 22 | 192.06 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 23 | 192.08 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 26 | 192.16 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 65 | 192.33 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 160 | 192.36 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 185 | 192.47 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 220 | 192.51 | temperature | 30.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 255 | 192.53 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 256 | 192.53 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 259 | 192.54 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 260 | 192.54 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 264 | 192.54 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 276 | 192.55 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 370 | 192.58 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 373 | 192.59 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 375 | 192.60 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 377 | 192.60 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 407 | 192.70 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 427 | 192.74 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 429 | 192.74 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 430 | 192.75 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 464 | 192.76 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 1 | 22 |
| 466 | 192.76 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 470 | 192.76 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 472 | 192.77 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 482 | 192.77 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 1 | 18 |
| 488 | 192.77 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 585 | 192.96 | temperature | 30.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 601 | 193.03 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 619 | 193.06 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 623 | 193.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 656 | 193.15 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 662 | 193.20 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 683 | 193.25 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 706 | 193.28 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 720 | 193.37 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 746 | 193.44 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 755 | 193.45 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 775 | 193.47 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 887 | 193.71 | temperature | 30.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 910 | 193.81 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 914 | 193.84 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 918 | 193.84 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 919 | 193.85 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 946 | 193.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 951 | 193.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 987 | 194.07 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 988 | 194.07 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 996 | 194.14 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |