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Os03g0238600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Purple acid phosphatase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0386) R2 : 0.574
β1 : -0.97 (0.143) R2dD : 0.0465 R2D : 9.43e-05
β2 : 1.65 (0.1) R2dC : 0.253 R2C : 0.235
β3 : -2.65 (0.176) R2dE : 0.231 R2E : 0.172
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.45 (0.574) R2dD*E : 0.109 R2D*E : 0.0318
γ1 : -0.56 (0.0831) R2dN8 : 0.0605 R2N8 : -0.00735
σ : 0.719
deviance : 238.59
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C
peak time of C : 6.61
E
wheather : radiation
threshold : 9.991
memory length : 963
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10.9
open length of G : 7.65

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
230.11 0.713 12.4 -0.955 1.57 -2.72 2.44 6.03 -0.52 6.49 9.621 894 10.8 7.83
279.42 0.779 12.4 -0.785 1.52 -2.66 3.33 -- -0.569 5.42 17.37 870 11.2 7.95
238.59 0.719 12.4 -0.97 1.65 -2.65 -- 6.45 -0.56 6.61 9.991 963 10.9 7.65
290.64 0.794 12.4 -0.818 1.62 -2.35 -- -- -0.567 6.33 20 978 11.3 7.34
351.34 0.873 12.5 -0.954 -- -3.42 -- 5.96 -0.668 -- 10 756 11 7.4
360.27 0.89 12.3 -0.663 1.82 -- 0.285 -- -0.336 8.36 -- -- -- --
360.49 0.889 12.3 -0.653 1.81 -- -- -- -0.336 8.41 -- -- -- --
340.43 0.859 12.4 -0.771 -- -2.42 -- -- -0.529 -- 70.33 730 10.9 6.27
307.06 0.816 12.4 -- 1.65 -2.31 -- -- -0.505 6.4 20 991 11.4 7.15
543.89 1.09 12.4 -0.643 -- -- -- -- -0.317 -- -- -- -- --
371.73 0.902 12.3 -- 1.81 -- -- -- -0.263 8.43 -- -- -- --
353.94 0.876 12.4 -- -- -2.29 -- -- -0.415 -- 73.26 711 11.2 6.36
554.81 1.1 12.4 -- -- -- -- -- -0.246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 252.58 radiation 10 720 < th dose dependent rect. 11 8
2 253.66 radiation 10 720 < th dose dependent rect. 9 10
9 258.05 radiation 10 720 < th dose dependent rect. 11 20
41 266.23 radiation 1 720 < th dose independent rect. 11 8
42 266.58 radiation 10 720 < th dose dependent sin 23 NA
84 271.03 radiation 10 1440 < th dose dependent rect. 11 12
138 272.80 radiation 10 1440 < th dose dependent sin 19 NA
143 273.20 humidity 60 720 > th dose dependent rect. 11 15
148 273.62 radiation 1 720 < th dose independent rect. 11 16
157 273.88 radiation 1 720 < th dose independent rect. 9 18
178 274.42 radiation 10 720 < th dose dependent rect. 21 22
180 274.49 humidity 60 720 > th dose dependent sin 19 NA
193 274.76 humidity 60 720 > th dose dependent rect. 12 8
196 274.82 radiation 1 720 > th dose independent rect. 9 7
220 275.40 radiation 1 720 > th dose independent rect. 9 20
236 275.81 radiation 1 720 > th dose independent rect. 9 10
283 276.94 radiation 10 720 < th dose dependent rect. 5 23
313 277.51 radiation 10 720 < th dose independent rect. 11 20
332 277.88 radiation 10 720 < th dose independent rect. 13 18
345 278.14 radiation 10 720 < th dose independent rect. 14 16
357 278.42 humidity 80 720 > th dose independent rect. 12 8
369 278.67 radiation 10 720 < th dose dependent no NA NA
384 279.00 radiation 1 720 > th dose independent sin 21 NA
429 279.71 radiation 10 720 < th dose dependent rect. 1 23
468 280.45 radiation 10 720 < th dose dependent rect. 3 23
540 281.73 radiation 10 1440 > th dose independent rect. 11 1
557 281.99 radiation 10 720 < th dose independent rect. 15 2
580 282.21 radiation 1 720 < th dose independent sin 22 NA
661 283.18 humidity 70 720 > th dose independent rect. 14 5
715 283.90 humidity 70 720 > th dose independent rect. 12 16
747 284.27 humidity 60 14400 > th dose independent rect. 21 11
865 285.75 radiation 10 720 < th dose independent sin 15 NA
941 286.55 humidity 80 720 > th dose independent sin 19 NA
982 287.03 temperature 20 1440 < th dose independent rect. 23 4
983 287.05 temperature 20 1440 > th dose independent rect. 23 4