BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0238600 Os03g0238600|AK070684
(339 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14700.1 | chr1:5058680-5060988 FORWARD LENGTH=367 399 e-112
AT1G25230.1 | chr1:8840474-8842298 REVERSE LENGTH=340 387 e-108
AT2G01890.1 | chr2:396985-399168 REVERSE LENGTH=336 384 e-107
AT3G17790.1 | chr3:6089779-6090988 FORWARD LENGTH=339 383 e-107
AT2G01880.1 | chr2:391563-393967 REVERSE LENGTH=329 369 e-102
>AT1G14700.1 | chr1:5058680-5060988 FORWARD LENGTH=367
Length = 366
Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 234/295 (79%), Gaps = 2/295 (0%)
Query: 33 RVEHPAKSDGSLSLLVVGDWGRKGTYNQSRVAEQMGKVGEKLNIDFVISTGDNFYEDGLT 92
R+ P+K+DG++S LV+GDWGR+G+YNQS+VA QMG++GEKL+IDFVISTGDNFY++GLT
Sbjct: 63 RLLQPSKTDGTVSFLVIGDWGRRGSYNQSQVALQMGEIGEKLDIDFVISTGDNFYDNGLT 122
Query: 93 GVDDQAFEESFTDIYTAKSLQKPWYLVLGNHDYRGDVLAQLSPVLRKIDQRFICMRSFIV 152
+ D F++SFT+IYTA SLQKPWY VLGNHDYRGDV AQLSP+LR +D R++CMRSFIV
Sbjct: 123 SLHDPLFQDSFTNIYTAPSLQKPWYSVLGNHDYRGDVRAQLSPMLRALDNRWVCMRSFIV 182
Query: 153 NAEIVDFFFIDTTPFQLKYWTRPKDHHYDWRGVAPRQKYITNLLKDMDEAMKKSTAKWKI 212
NAEIVD FF+DTTPF KY+ +P H YDW GV PRQ Y+ NLLK++D A+++S AKWKI
Sbjct: 183 NAEIVDLFFVDTTPFVDKYFIQPNKHVYDWSGVLPRQTYLNNLLKELDVALRESVAKWKI 242
Query: 213 AVGHHTIRSVSDHGDTKEXXXXXXXXXKVNGIDFYINGHDHCLEHISSRDSPIQYFTSGG 272
+GHHTI+S HG+T E + N +D Y+NGHDHCLEHISS DS IQ+ TSGG
Sbjct: 243 VIGHHTIKSAGHHGNTIELEKHLLPILQANEVDLYVNGHDHCLEHISSVDSNIQFMTSGG 302
Query: 273 GSKAWRG--VLQPNSDKLQFFYDGQGFMSLQINQDQADFIFYDVSGNILYKWSKS 325
GSKAW+G V ++++F+YDGQGFMS+ +++ + +FYDV G++L+ W K+
Sbjct: 303 GSKAWKGGDVNYVEPEEMRFYYDGQGFMSVHVSEAELRVVFYDVFGHVLHHWKKT 357
>AT1G25230.1 | chr1:8840474-8842298 REVERSE LENGTH=340
Length = 339
Score = 387 bits (993), Expect = e-108, Method: Compositional matrix adjust.
Identities = 171/294 (58%), Positives = 226/294 (76%), Gaps = 1/294 (0%)
Query: 34 VEHPAKSDGSLSLLVVGDWGRKGTYNQSRVAEQMGKVGEKLNIDFVISTGDNFYEDGLTG 93
V+H DGS+S LV+GDWGR G YNQS+VA QMG++GE+++I+FV+STGDN Y++G+
Sbjct: 36 VQHAPNPDGSISFLVIGDWGRHGLYNQSQVALQMGRIGEEMDINFVVSTGDNIYDNGMKS 95
Query: 94 VDDQAFEESFTDIYTAKSLQKPWYLVLGNHDYRGDVLAQLSPVLRKIDQRFICMRSFIVN 153
+DD AF+ SF++IYT+ SLQKPWYLVLGNHDYRGDV AQLSP+LR +D R+ICMRSFIV+
Sbjct: 96 IDDPAFQLSFSNIYTSPSLQKPWYLVLGNHDYRGDVEAQLSPILRSMDSRWICMRSFIVD 155
Query: 154 AEIVDFFFIDTTPFQLKYWTRPKDHHYDWRGVAPRQKYITNLLKDMDEAMKKSTAKWKIA 213
AEI + FF+DTTPF Y+ P+D YDW GV+PR+ Y+ +L +++ +++S+AKWKI
Sbjct: 156 AEIAELFFVDTTPFVDAYFLSPQDQTYDWSGVSPRKSYLQTILTELEMGLRESSAKWKIV 215
Query: 214 VGHHTIRSVSDHGDTKEXXXXXXXXXKVNGIDFYINGHDHCLEHISSRDSPIQYFTSGGG 273
VGHH I+S S HG+TKE + N +D Y+NGHDHCL+HIS+ SPIQ+ TSGGG
Sbjct: 216 VGHHAIKSASIHGNTKELESLLLPILEANKVDLYMNGHDHCLQHISTSQSPIQFLTSGGG 275
Query: 274 SKAWRGVLQ-PNSDKLQFFYDGQGFMSLQINQDQADFIFYDVSGNILYKWSKSK 326
SKAWRG + ++FFYDGQGFMS++I + + +FYDVSGN L+KW SK
Sbjct: 276 SKAWRGYYNWTTPEDMKFFYDGQGFMSVKITRSELSVVFYDVSGNSLHKWDTSK 329
>AT2G01890.1 | chr2:396985-399168 REVERSE LENGTH=336
Length = 335
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 180/295 (61%), Positives = 228/295 (77%), Gaps = 1/295 (0%)
Query: 33 RVEHPAKSDGSLSLLVVGDWGRKGTYNQSRVAEQMGKVGEKLNIDFVISTGDNFYEDGLT 92
R P + DGSLS LVVGDWGR+G+YNQS+VA QMGK+G+ LNIDF+ISTGDNFY+DG+
Sbjct: 34 RFVQPPEPDGSLSFLVVGDWGRRGSYNQSQVALQMGKIGKDLNIDFLISTGDNFYDDGII 93
Query: 93 GVDDQAFEESFTDIYTAKSLQKPWYLVLGNHDYRGDVLAQLSPVLRKIDQRFICMRSFIV 152
D F++SFT+IYTA SLQKPWY VLGNHDYRG+V AQLSP+LR +D R+IC+RS++V
Sbjct: 94 SPYDSQFQDSFTNIYTATSLQKPWYNVLGNHDYRGNVYAQLSPILRDLDCRWICLRSYVV 153
Query: 153 NAEIVDFFFIDTTPFQLKYWTRPKDHHYDWRGVAPRQKYITNLLKDMDEAMKKSTAKWKI 212
NAEIVD FF+DTTPF +Y+ PKDH YDWRGV PR KY+ +LL D+D A+++S AKWKI
Sbjct: 154 NAEIVDIFFVDTTPFVDRYFDEPKDHVYDWRGVLPRNKYLNSLLTDVDVALQESMAKWKI 213
Query: 213 AVGHHTIRSVSDHGDTKEXXXXXXXXXKVNGIDFYINGHDHCLEHISSRDSPIQYFTSGG 272
VGHHTI+S HG+T E + N +D YINGHDHCLEHISS +S IQ+ TSGG
Sbjct: 214 VVGHHTIKSAGHHGNTIELEKQLLPILEANEVDLYINGHDHCLEHISSINSGIQFMTSGG 273
Query: 273 GSKAWRG-VLQPNSDKLQFFYDGQGFMSLQINQDQADFIFYDVSGNILYKWSKSK 326
GSKAW+G V N +++F+YDGQGFMS+ ++ + +FYD G++L++WS K
Sbjct: 274 GSKAWKGDVNDWNPQEMRFYYDGQGFMSVYTSEAELRVVFYDGLGHVLHRWSTLK 328
>AT3G17790.1 | chr3:6089779-6090988 FORWARD LENGTH=339
Length = 338
Score = 383 bits (983), Expect = e-107, Method: Compositional matrix adjust.
Identities = 175/297 (58%), Positives = 222/297 (74%), Gaps = 3/297 (1%)
Query: 33 RVEHPAKSDGSLSLLVVGDWGRKGTYNQSRVAEQMGKVGEKLNIDFVISTGDNFYEDGLT 92
R PAKSDGS+S +V+GDWGR+G++NQS VA QMGK+GEK+++DFV+STGDNFY++GL
Sbjct: 35 RFIEPAKSDGSVSFIVIGDWGRRGSFNQSLVAYQMGKIGEKIDLDFVVSTGDNFYDNGLF 94
Query: 93 GVDDQAFEESFTDIYTAKSLQKPWYLVLGNHDYRGDVLAQLSPVLRKIDQRFICMRSFIV 152
D FE+SF++IYTA SLQK WY VLGNHDYRGD AQLS VLR+ID R+IC+RSF+V
Sbjct: 95 SEHDPNFEQSFSNIYTAPSLQKQWYSVLGNHDYRGDAEAQLSSVLREIDSRWICLRSFVV 154
Query: 153 NAEIVDFFFIDTTPFQLKYWTRPKDHHYDWRGVAPRQKYITNLLKDMDEAMKKSTAKWKI 212
+AE+V+ FF+DTTPF +Y+T H YDWR V R Y+ LL+D++ ++K S A+WKI
Sbjct: 155 DAELVEMFFVDTTPFVKEYYTEADGHSYDWRAVPSRNSYVKALLRDLEVSLKSSKARWKI 214
Query: 213 AVGHHTIRSVSDHGDTKEXXXXXXXXXKVNGIDFYINGHDHCLEHISSRDSPIQYFTSGG 272
VGHH +RS+ HGDTKE K NG+D Y+NGHDHCL+H+S DSPIQ+ TSG
Sbjct: 215 VVGHHAMRSIGHHGDTKELNEELLPILKENGVDLYMNGHDHCLQHMSDEDSPIQFLTSGA 274
Query: 273 GSKAWRGVLQP---NSDKLQFFYDGQGFMSLQINQDQADFIFYDVSGNILYKWSKSK 326
GSKAWRG + P N L+F+YDGQGFMS + A+ +FYDV G IL+KW SK
Sbjct: 275 GSKAWRGDINPVTINPKLLKFYYDGQGFMSARFTHSDAEIVFYDVFGEILHKWVTSK 331
>AT2G01880.1 | chr2:391563-393967 REVERSE LENGTH=329
Length = 328
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/297 (60%), Positives = 221/297 (74%), Gaps = 4/297 (1%)
Query: 33 RVEHPAK--SDGSLSLLVVGDWGRKGTYNQSRVAEQMGKVGEKLNIDFVISTGDNFYEDG 90
R++HP K SDGSLS LV+GDWGRKG +NQS VA QMG VGEKL+IDFVIS GDNFY+DG
Sbjct: 28 RLKHPVKKKSDGSLSFLVIGDWGRKGGFNQSLVAHQMGVVGEKLDIDFVISVGDNFYDDG 87
Query: 91 LTGVDDQAFEESFTDIYTAKSLQKPWYLVLGNHDYRGDVLAQLSPVLRKIDQRFICMRSF 150
L GV+D +FE SF+ IYT SLQK WY VLGNHDYRG+V AQLS VL + D R+ C RSF
Sbjct: 88 LKGVNDPSFEASFSHIYTHPSLQKQWYSVLGNHDYRGNVEAQLSKVLTQKDWRWFCRRSF 147
Query: 151 IVNAEIVDFFFIDTTPFQLKYWTRPKDHHYDWRGVAPRQKYITNLLKDMDEAMKKSTAKW 210
++++ +VDFFF DT PF KY+T P+DH YDWR V PR KYI+NLL D+D +KKS A W
Sbjct: 148 VLSSGMVDFFFADTNPFVEKYFTEPEDHTYDWRNVLPRNKYISNLLHDLDLEIKKSRATW 207
Query: 211 KIAVGHHTIRSVSDHGDTKEXXXXXXXXXKVNGIDFYINGHDHCLEHISSRDSPIQYFTS 270
K VGHH I++ +HG T+E + N +D YINGHDHCL+HI S Q+ TS
Sbjct: 208 KFVVGHHGIKTAGNHGVTQELVDQLLPILEENKVDLYINGHDHCLQHIGSH-GKTQFLTS 266
Query: 271 GGGSKAWRGVLQP-NSDKLQFFYDGQGFMSLQINQDQADFIFYDVSGNILYKWSKSK 326
GGGSKAWRG +QP + +L+ +YDGQGFMSL I +A FI+YDVSGN+L++ S SK
Sbjct: 267 GGGSKAWRGHVQPWDPKELKLYYDGQGFMSLHITHSKAKFIYYDVSGNVLHRSSLSK 323
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,892,949
Number of extensions: 287963
Number of successful extensions: 566
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 5
Length of query: 339
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 240
Effective length of database: 8,392,385
Effective search space: 2014172400
Effective search space used: 2014172400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)