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Os03g0232600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : U box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0202) R2 : 0.684
β1 : -1.42 (0.0739) R2dD : 0.266 R2D : 0.174
β2 : 1.26 (0.0527) R2dC : 0.398 R2C : 0.345
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.523 (0.0431) R2dN8 : 0.137 R2N8 : 0.0304
σ : 0.379
deviance : 65.64
__
_____
C
peak time of C : 5.96
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.09 0.358 11.5 -1.2 1.24 -0.427 0.0937 -1.3 -0.53 5.99 1010 5080 -- --
61.9 0.366 11.5 -1.53 1.23 -0.296 0.199 -- -0.605 5.97 1010 10414 -- --
58.11 0.355 11.5 -1.2 1.24 -0.427 -- -1.3 -0.53 6 1010 5079 -- --
61.93 0.367 11.5 -1.54 1.25 -0.308 -- -- -0.61 5.96 1010 10107 -- --
137.86 0.547 11.5 -1.19 -- -0.51 -- -1.37 -0.521 -- 1010 5032 -- --
65.54 0.38 11.5 -1.42 1.26 -- 0.193 -- -0.522 5.96 -- -- -- --
65.64 0.379 11.5 -1.42 1.26 -- -- -- -0.523 5.96 -- -- -- --
141.62 0.554 11.5 -1.51 -- -0.412 -- -- -0.382 -- 1009 3987 -- --
115 0.502 11.4 -- 1.21 0.252 -- -- -0.409 5.93 1009 7557 -- --
147.82 0.568 11.5 -1.38 -- -- -- -- -0.494 -- -- -- -- --
118.87 0.51 11.4 -- 1.24 -- -- -- -0.365 6.02 -- -- -- --
177.83 0.621 11.4 -- -- 0.725 -- -- -0.152 -- 1013 47520 -- --
198.34 0.657 11.5 -- -- -- -- -- -0.341 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.70 atmosphere 1000.0 270 > th dose independent rect. 11 17
2 51.70 atmosphere 1000.0 90 > th dose independent rect. 24 17
3 51.71 atmosphere 1000.0 270 > th dose independent rect. 22 6
4 51.79 atmosphere 1000.0 270 > th dose independent rect. 22 18
6 52.03 humidity 60.0 270 > th dose independent rect. 3 8
9 52.22 precipitation 0.1 270 < th dose independent rect. 3 8
10 52.22 precipitation 0.1 270 < th dose dependent rect. 3 8
11 52.35 radiation 10.0 43200 < th dose dependent rect. 19 6
16 52.57 atmosphere 1000.0 10 > th dose independent rect. 24 18
22 52.65 precipitation 0.1 270 < th dose independent rect. 16 7
23 52.65 precipitation 0.1 270 < th dose dependent rect. 16 7
29 52.75 atmosphere 1000.0 10 > th dose independent rect. 13 16
41 53.18 wind 9.0 270 < th dose independent rect. 16 7
49 53.31 temperature 10.0 270 > th dose independent rect. 16 7
50 53.31 radiation 40.0 270 < th dose independent rect. 16 7
51 53.31 temperature 10.0 270 > th dose independent rect. 23 17
52 53.33 temperature 10.0 270 > th dose independent rect. 3 8
53 53.33 atmosphere 995.0 270 > th dose independent rect. 3 8
54 53.33 atmosphere 1015.0 270 < th dose independent rect. 3 8
55 53.33 temperature 10.0 270 > th dose independent rect. 11 16
57 53.34 wind 9.0 270 < th dose independent rect. 23 17
63 53.42 wind 9.0 270 < th dose independent rect. 3 8
68 53.49 precipitation 0.1 270 < th dose independent rect. 17 16
69 53.49 precipitation 0.1 270 < th dose dependent rect. 17 16
73 53.53 humidity 50.0 270 > th dose dependent rect. 22 6
74 53.55 wind 1.0 270 > th dose independent rect. 16 7
76 53.58 atmosphere 1000.0 270 > th dose independent rect. 23 4
92 53.67 precipitation 0.1 270 < th dose independent rect. 16 19
93 53.67 precipitation 0.1 270 < th dose dependent rect. 16 19
94 53.68 atmosphere 1015.0 270 < th dose independent rect. 23 17
104 53.74 radiation 20.0 90 < th dose dependent rect. 17 7
109 53.76 radiation 10.0 10 < th dose dependent rect. 24 17
111 53.79 wind 9.0 270 < th dose independent rect. 11 16
113 53.80 precipitation 0.1 270 < th dose independent rect. 4 18
114 53.80 precipitation 0.1 270 < th dose dependent rect. 4 18
124 53.88 humidity 50.0 90 > th dose independent rect. 17 7
161 54.21 atmosphere 995.0 90 > th dose independent rect. 17 7
171 54.26 radiation 30.0 270 < th dose independent rect. 17 16
173 54.29 atmosphere 1015.0 270 < th dose independent rect. 16 6
182 54.37 radiation 1.0 270 < th dose dependent rect. 22 16
190 54.40 radiation 1.0 270 < th dose dependent rect. 21 11
197 54.43 precipitation 0.1 270 < th dose independent rect. 23 17
202 54.43 precipitation 0.1 270 < th dose dependent rect. 23 17
232 54.53 temperature 10.0 270 > th dose independent rect. 22 6
233 54.53 temperature 30.0 270 < th dose independent rect. 22 6
234 54.53 humidity 50.0 270 > th dose independent rect. 22 6
238 54.53 radiation 1.0 270 < th dose independent rect. 22 6
243 54.53 temperature 10.0 270 > th dose independent rect. 4 18
245 54.53 radiation 1.0 270 < th dose dependent rect. 22 6
255 54.55 wind 9.0 270 < th dose independent rect. 4 18
264 54.57 wind 9.0 270 < th dose independent rect. 22 6
274 54.58 humidity 60.0 90 > th dose independent rect. 18 18
279 54.59 atmosphere 1015.0 270 < th dose dependent rect. 16 6
293 54.64 radiation 1.0 90 > th dose independent rect. 18 19
302 54.68 precipitation 0.1 270 < th dose independent rect. 3 20
303 54.68 precipitation 0.1 270 < th dose dependent rect. 3 20
306 54.71 radiation 1.0 30 > th dose independent rect. 5 8
322 54.73 humidity 60.0 10 > th dose independent rect. 18 7
330 54.77 radiation 1.0 30 < th dose independent rect. 24 17
335 54.79 atmosphere 1010.0 270 < th dose independent rect. 22 6
336 54.79 radiation 1.0 270 < th dose independent rect. 22 16
338 54.80 radiation 1.0 270 < th dose independent rect. 21 12
339 54.80 wind 1.0 270 > th dose independent rect. 5 17
378 54.88 radiation 1.0 270 < th dose independent rect. 21 9
386 54.89 precipitation 0.1 270 < th dose independent rect. 11 16
390 54.89 precipitation 0.1 270 < th dose dependent rect. 11 16
395 54.90 wind 9.0 270 < th dose dependent rect. 16 6
424 54.98 atmosphere 1000.0 270 > th dose independent rect. 11 5
429 54.98 atmosphere 1015.0 270 < th dose independent rect. 4 18
438 55.01 atmosphere 1015.0 90 < th dose independent rect. 18 6
447 55.02 temperature 10.0 270 > th dose dependent rect. 3 8
450 55.03 precipitation 0.1 270 < th dose independent rect. 15 22
451 55.03 precipitation 0.1 270 < th dose dependent rect. 15 22
457 55.04 wind 7.0 270 < th dose independent rect. 17 16
468 55.06 wind 9.0 270 < th dose independent rect. 16 19
474 55.07 temperature 10.0 90 > th dose dependent rect. 18 6
488 55.13 precipitation 0.1 270 < th dose independent rect. 22 6
490 55.13 precipitation 0.1 270 < th dose dependent rect. 22 6
522 55.18 temperature 10.0 270 > th dose independent rect. 11 5
524 55.18 atmosphere 1015.0 270 < th dose independent rect. 11 5
526 55.18 temperature 10.0 270 > th dose independent rect. 16 19
530 55.19 precipitation 0.1 270 < th dose independent rect. 11 5
533 55.19 precipitation 0.1 270 < th dose dependent rect. 11 5
542 55.20 temperature 30.0 10 < th dose independent rect. 18 7
545 55.21 wind 9.0 270 < th dose independent rect. 11 5
571 55.23 radiation 1.0 1440 < th dose dependent rect. 19 7
628 55.35 humidity 50.0 10 > th dose independent rect. 5 8
650 55.38 temperature 10.0 270 > th dose independent rect. 9 8
651 55.38 atmosphere 1015.0 270 < th dose independent rect. 9 8
652 55.38 temperature 10.0 270 > th dose independent rect. 17 16
656 55.39 temperature 10.0 10 > th dose independent rect. 18 7
659 55.39 radiation 20.0 10 < th dose independent rect. 18 7
664 55.39 temperature 10.0 10 > th dose independent rect. 1 17
666 55.39 atmosphere 1015.0 10 < th dose independent rect. 1 17
673 55.41 atmosphere 995.0 10 > th dose independent rect. 18 7
676 55.41 radiation 10.0 10 < th dose dependent rect. 24 12
686 55.43 atmosphere 995.0 270 > th dose independent rect. 10 7
694 55.43 radiation 40.0 270 < th dose independent rect. 16 19
727 55.47 radiation 40.0 270 < th dose independent rect. 4 7
730 55.47 precipitation 0.1 270 < th dose independent rect. 2 22
732 55.47 precipitation 0.1 270 < th dose dependent rect. 2 22
735 55.48 radiation 10.0 10 < th dose dependent sin 5 NA
746 55.49 wind 9.0 10 < th dose independent rect. 1 17
752 55.49 radiation 10.0 10 < th dose dependent rect. 24 9
765 55.51 wind 9.0 270 < th dose independent rect. 9 8
823 55.58 atmosphere 995.0 270 > th dose dependent rect. 22 6
837 55.60 atmosphere 995.0 270 > th dose dependent rect. 11 5
847 55.62 precipitation 0.1 270 < th dose independent rect. 10 7
849 55.62 precipitation 0.1 270 < th dose dependent rect. 10 7
852 55.62 radiation 1.0 90 < th dose dependent rect. 9 15
870 55.65 radiation 1.0 270 > th dose independent rect. 11 5
881 55.67 humidity 50.0 270 > th dose independent rect. 17 16
901 55.71 radiation 1.0 90 < th dose independent rect. 24 8
935 55.75 temperature 10.0 1440 > th dose independent rect. 19 7
939 55.75 temperature 30.0 1440 < th dose independent rect. 19 7
943 55.75 humidity 50.0 1440 > th dose independent rect. 19 7
945 55.75 atmosphere 995.0 1440 > th dose independent rect. 19 7
946 55.75 radiation 1.0 1440 < th dose independent rect. 19 7
967 55.75 temperature 10.0 1440 > th dose independent rect. 2 17
977 55.76 radiation 1.0 90 < th dose independent rect. 9 15