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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0231800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Squalene monooxygenase 1 (EC 1.14.99.7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0261) R2 : 0.769
β1 : -2.02 (0.0952) R2dD : 0.232 R2D : 0.261
β2 : 1.82 (0.0642) R2dC : 0.414 R2C : 0.407
β3 : -2.6 (0.185) R2dE : 0.105 R2E : 0.128
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0791 (0.0561) R2dN8 : 0.00132 R2N8 : -0.0121
σ : 0.485
deviance : 108.39
__
_____
C
peak time of C : 9.12
E
wheather : humidity
threshold : 93
memory length : 510
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 13.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
107.79 0.488 12.2 -2.05 1.86 -2.51 0.0384 1.33 -0.0915 9.21 93 573 13.3 --
108.9 0.486 12.3 -2.01 1.86 -2.44 0.0861 -- -0.0837 9.18 93 567 13.1 --
106.65 0.481 12.3 -2.07 1.82 -2.64 -- 1.92 -0.0836 9.13 93 510 13.3 --
108.39 0.485 12.2 -2.02 1.82 -2.6 -- -- -0.0791 9.12 93 510 13.1 --
149.69 0.573 12.3 -2.09 -- -2 -- -0.155 0.0498 -- -4.363 4 8.76 --
151.74 0.577 12.2 -2.09 1.81 -- 0.19 -- 0.0613 9.67 -- -- -- --
151.88 0.577 12.2 -2.09 1.81 -- -- -- 0.0617 9.68 -- -- -- --
149.47 0.569 12.3 -2.07 -- -1.97 -- -- 0.0577 -- -19.74 15 8.85 --
213.44 0.68 12.2 -- 1.84 -2.92 -- -- 0.0648 9.17 93.12 506 13.2 --
345.59 0.869 12.3 -2.1 -- -- -- -- 0.0646 -- -- -- -- --
266.53 0.764 12.2 -- 1.81 -- -- -- 0.294 9.76 -- -- -- --
264.41 0.757 12.2 -- -- -1.93 -- -- 0.292 -- -45.43 17 8.72 --
462.08 1 12.2 -- -- -- -- -- 0.298 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.66 humidity 90.0 720 > th dose dependent rect. 19 2
4 120.91 humidity 90.0 720 > th dose dependent rect. 18 5
8 122.17 precipitation 0.1 270 > th dose independent rect. 19 9
10 122.60 humidity 90.0 720 > th dose dependent rect. 17 8
23 124.37 humidity 90.0 720 < th dose independent rect. 19 5
31 124.84 humidity 90.0 720 > th dose dependent rect. 11 14
33 124.85 precipitation 0.1 720 > th dose dependent rect. 18 10
36 124.97 wind 1.0 720 < th dose independent rect. 16 3
41 125.04 humidity 90.0 720 > th dose dependent sin 19 NA
58 125.69 humidity 70.0 720 > th dose dependent rect. 15 12
94 126.29 humidity 80.0 1440 > th dose independent rect. 11 3
103 126.42 precipitation 0.1 720 > th dose independent rect. 19 6
107 126.46 humidity 80.0 1440 < th dose independent rect. 11 3
119 126.59 precipitation 0.1 720 > th dose dependent rect. 16 4
124 126.66 wind 1.0 720 < th dose dependent rect. 18 1
129 126.70 precipitation 0.1 720 > th dose independent rect. 18 1
141 126.81 precipitation 0.1 720 > th dose dependent rect. 18 1
142 126.84 precipitation 0.1 720 > th dose independent rect. 16 3
163 127.11 precipitation 0.1 720 > th dose independent rect. 19 3
180 127.31 wind 1.0 720 < th dose independent rect. 18 1
182 127.33 humidity 80.0 1440 > th dose dependent rect. 11 3
201 127.54 precipitation 0.1 720 > th dose dependent rect. 18 23
233 127.94 humidity 90.0 720 < th dose dependent rect. 19 5
271 128.57 humidity 80.0 720 < th dose independent rect. 12 14
293 128.70 precipitation 0.1 270 > th dose dependent sin 10 NA
319 128.98 precipitation 0.1 270 > th dose independent sin 11 NA
324 129.00 humidity 90.0 720 > th dose independent rect. 20 1
337 129.07 precipitation 0.1 270 > th dose independent rect. 2 2
342 129.19 precipitation 0.1 270 > th dose dependent rect. 2 2
355 129.33 radiation 1.0 720 < th dose dependent rect. 14 3
363 129.40 precipitation 0.1 720 < th dose independent rect. 12 9
364 129.40 precipitation 0.1 720 < th dose dependent rect. 12 9
366 129.43 radiation 1.0 1440 < th dose dependent rect. 9 8
369 129.45 precipitation 0.1 270 > th dose independent rect. 23 5
370 129.46 wind 1.0 720 < th dose dependent rect. 16 2
379 129.51 humidity 90.0 720 > th dose independent rect. 17 8
386 129.54 humidity 80.0 720 > th dose independent rect. 14 14
394 129.59 precipitation 0.1 720 > th dose independent rect. 23 21
399 129.62 humidity 90.0 720 < th dose dependent rect. 20 1
401 129.63 precipitation 0.1 720 < th dose independent rect. 10 23
404 129.63 precipitation 0.1 720 < th dose dependent rect. 10 23
406 129.65 humidity 90.0 720 > th dose independent rect. 19 4
453 129.87 precipitation 0.1 720 > th dose independent rect. 7 13
471 129.93 precipitation 0.1 270 > th dose dependent rect. 24 4
477 129.95 wind 1.0 90 < th dose independent rect. 24 1
484 129.99 precipitation 0.1 720 > th dose dependent rect. 8 12
490 130.02 wind 1.0 90 < th dose dependent rect. 24 1
528 130.18 precipitation 0.1 720 > th dose independent rect. 16 12
558 130.30 precipitation 0.1 720 < th dose independent rect. 2 23
560 130.30 precipitation 0.1 720 < th dose dependent rect. 2 23
593 130.49 humidity 80.0 1440 > th dose independent rect. 13 1
594 130.49 humidity 80.0 1440 < th dose independent rect. 23 18
602 130.51 precipitation 0.1 270 > th dose independent rect. 19 14
603 130.51 precipitation 0.1 720 < th dose independent rect. 12 17
606 130.51 precipitation 0.1 720 < th dose dependent rect. 12 17
609 130.53 precipitation 0.1 720 > th dose independent rect. 18 23
625 130.61 humidity 90.0 720 > th dose independent rect. 16 1
632 130.64 humidity 90.0 720 > th dose dependent rect. 16 1
633 130.65 atmosphere 1005.0 270 < th dose independent rect. 23 2
666 130.77 precipitation 0.1 720 < th dose independent rect. 10 15
667 130.77 precipitation 0.1 720 < th dose dependent rect. 10 15
685 130.84 precipitation 0.1 720 > th dose dependent rect. 23 21
686 130.86 precipitation 0.1 720 < th dose independent sin 15 NA
688 130.86 precipitation 0.1 720 < th dose dependent sin 15 NA
693 130.88 humidity 80.0 1440 > th dose independent rect. 23 18
716 130.98 atmosphere 1005.0 270 < th dose independent rect. 22 4
757 131.11 precipitation 0.1 720 < th dose independent rect. 11 20
758 131.11 precipitation 0.1 720 < th dose dependent rect. 11 20
776 131.16 humidity 80.0 1440 > th dose independent rect. 3 14
798 131.24 precipitation 0.1 720 > th dose independent rect. 14 3
813 131.27 humidity 80.0 720 > th dose independent rect. 14 7
815 131.27 humidity 90.0 270 > th dose dependent rect. 23 2
823 131.31 humidity 80.0 720 < th dose independent sin 17 NA
860 131.43 precipitation 0.1 720 < th dose independent sin 20 NA
862 131.43 precipitation 0.1 720 < th dose dependent sin 20 NA
894 131.49 precipitation 0.1 720 > th dose dependent sin 13 NA
982 131.75 precipitation 0.1 720 > th dose dependent rect. 12 16
986 131.76 humidity 90.0 720 > th dose independent sin 18 NA