FiT-DB / Search/ Help/ Sample detail

Os03g0228200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0538) R2 : 0.933
β1 : -- (--) R2dD : -- R2D : --
β2 : 6.34 (0.177) R2dC : 0.32 R2C : 0.676
β3 : -8.16 (0.255) R2dE : 0.256 R2E : 0.613
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.103 (0.114) R2dN8 : 0.000147 R2N8 : -0.00123
σ : 1.01
deviance : 469.54
__
_____
C
peak time of C : 8.18
E
wheather : temperature
threshold : 17.19
memory length : 253
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.6
open length of G : 6.57

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
471.68 1.02 12.5 -0.167 5.99 -8.2 1.42 -0.153 -0.179 8.03 15.85 259 17.4 6.83
468.62 1.01 12.5 -0.105 6.04 -8.19 0.946 -- -0.131 8.06 16.25 253 17.5 6.8
475.18 1.02 12.5 -0.12 5.96 -8.24 -- -0.561 -0.147 8.03 16.16 257 17.5 6.85
469.74 1.01 12.5 -0.0962 6.3 -8.26 -- -- -0.0923 8.15 17.15 253 17.6 6.61
1201.06 1.61 12.7 1.02 -- -11.5 -- 0.431 0.86 -- 11.76 212 16.7 8.23
1156.86 1.59 12.5 -0.725 10 -- 3.16 -- -0.593 9.08 -- -- -- --
1191.72 1.62 12.5 -0.615 10 -- -- -- -0.591 9.07 -- -- -- --
783.61 1.3 12.8 -0.802 -- -11.6 -- -- -0.616 -- 4.201 316 15.4 7.9
469.54 1.01 12.5 -- 6.34 -8.16 -- -- -0.103 8.18 17.19 253 17.6 6.57
6974.94 3.9 12.8 -0.636 -- -- -- -- -0.533 -- -- -- -- --
1201.7 1.62 12.5 -- 10 -- -- -- -0.523 9.08 -- -- -- --
718.01 1.25 12.7 -- -- -11.9 -- -- -0.229 -- 2.728 366 14.7 8.25
6985.61 3.9 12.7 -- -- -- -- -- -0.463 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 491.43 temperature 20.0 270 > th dose independent rect. 16 8
3 498.73 temperature 15.0 270 > th dose dependent rect. 17 7
51 644.53 temperature 10.0 270 > th dose dependent rect. 18 15
63 652.28 temperature 20.0 90 > th dose independent rect. 7 18
191 733.78 temperature 30.0 270 < th dose dependent rect. 22 7
197 737.68 temperature 20.0 90 > th dose independent rect. 19 17
207 742.08 temperature 20.0 10 > th dose independent rect. 20 16
228 751.15 atmosphere 1015.0 270 < th dose independent rect. 5 18
231 751.42 atmosphere 1015.0 270 < th dose independent rect. 18 16
246 758.39 atmosphere 1010.0 270 < th dose independent rect. 17 6
321 782.72 precipitation 0.1 270 < th dose independent rect. 10 8
322 782.72 precipitation 0.1 270 < th dose dependent rect. 10 8
335 785.95 wind 1.0 270 > th dose independent rect. 17 6
347 787.71 wind 9.0 270 < th dose independent rect. 18 16
348 787.91 temperature 10.0 270 > th dose independent rect. 10 8
349 787.91 atmosphere 1015.0 270 < th dose independent rect. 10 8
351 788.10 humidity 50.0 270 > th dose independent rect. 18 16
362 792.26 wind 9.0 270 < th dose independent rect. 10 8
377 795.58 precipitation 0.1 270 < th dose independent rect. 18 16
378 795.58 precipitation 0.1 270 < th dose dependent rect. 18 16
379 795.65 atmosphere 995.0 270 > th dose independent rect. 18 16
388 798.53 wind 1.0 270 > th dose independent rect. 23 6
399 800.97 wind 7.0 270 < th dose independent rect. 22 7
409 801.67 radiation 1.0 270 < th dose independent rect. 22 8
417 802.49 radiation 10.0 270 < th dose dependent rect. 22 7
421 802.58 temperature 10.0 270 > th dose independent rect. 22 7
422 802.58 temperature 30.0 270 < th dose independent rect. 22 7
423 802.58 humidity 50.0 270 > th dose independent rect. 22 7
426 802.58 atmosphere 995.0 270 > th dose independent rect. 22 7
430 802.58 temperature 10.0 270 > th dose independent rect. 5 17
441 803.91 precipitation 0.1 270 < th dose independent rect. 22 7
442 803.91 precipitation 0.1 270 < th dose dependent rect. 22 7
457 805.98 temperature 15.0 10 > th dose dependent rect. 20 16
458 806.39 wind 9.0 270 < th dose independent rect. 5 17
472 808.82 precipitation 0.1 270 < th dose independent rect. 23 18
473 808.82 precipitation 0.1 270 < th dose dependent rect. 23 18
502 810.68 precipitation 0.1 270 < th dose independent rect. 5 17
503 810.68 precipitation 0.1 270 < th dose dependent rect. 5 17
509 811.87 radiation 1.0 270 > th dose independent rect. 10 8
511 811.99 wind 1.0 270 > th dose independent rect. 10 8
517 812.54 radiation 40.0 270 < th dose independent rect. 18 16
532 814.26 radiation 40.0 270 < th dose dependent rect. 16 7
545 814.57 precipitation 0.1 270 < th dose independent rect. 17 6
546 814.57 precipitation 0.1 270 < th dose dependent rect. 17 6
548 814.70 radiation 10.0 270 < th dose independent rect. 17 6
551 814.84 wind 9.0 270 < th dose independent rect. 17 6
556 814.91 temperature 10.0 270 > th dose independent rect. 23 18
582 817.95 wind 9.0 270 < th dose independent rect. 23 18
587 818.18 humidity 50.0 270 > th dose independent rect. 17 6
669 826.58 temperature 10.0 270 > th dose independent rect. 4 8
670 826.58 atmosphere 995.0 270 > th dose independent rect. 4 8
671 826.58 atmosphere 1015.0 270 < th dose independent rect. 4 8
672 826.58 temperature 10.0 270 > th dose independent rect. 12 16
678 826.78 wind 9.0 270 < th dose independent rect. 4 8
689 827.79 precipitation 0.1 270 < th dose independent rect. 4 7
691 827.79 precipitation 0.1 270 < th dose dependent rect. 4 7
692 827.90 atmosphere 1015.0 270 < th dose independent rect. 4 21
708 828.95 atmosphere 995.0 270 > th dose independent rect. 10 8
712 829.04 wind 9.0 270 < th dose independent rect. 12 16
714 829.21 humidity 50.0 270 > th dose independent rect. 4 7
722 830.05 radiation 1.0 90 < th dose dependent rect. 7 18
738 831.00 atmosphere 1015.0 10 < th dose independent rect. 7 18
753 831.60 atmosphere 995.0 270 > th dose independent rect. 17 6
776 833.89 precipitation 0.1 270 < th dose independent rect. 12 16
777 833.89 precipitation 0.1 270 < th dose dependent rect. 12 16
795 836.28 precipitation 0.1 270 < th dose independent rect. 11 18
796 836.28 precipitation 0.1 270 < th dose dependent rect. 11 18
804 836.62 atmosphere 995.0 270 > th dose independent rect. 23 18
816 837.24 atmosphere 1015.0 270 < th dose independent rect. 24 16
822 837.87 radiation 1.0 90 < th dose independent rect. 8 17
841 838.72 atmosphere 1015.0 270 < th dose dependent rect. 17 6
854 839.65 temperature 30.0 270 < th dose independent rect. 18 16
876 840.82 atmosphere 995.0 270 > th dose independent rect. 5 17
941 844.78 temperature 30.0 270 < th dose dependent rect. 14 15
942 844.80 atmosphere 1015.0 270 < th dose independent rect. 23 6
947 845.07 wind 1.0 270 > th dose independent rect. 5 18
965 846.84 wind 5.0 270 < th dose independent rect. 18 4
976 847.61 atmosphere 995.0 270 > th dose dependent rect. 23 6
991 848.83 atmosphere 1015.0 270 < th dose independent rect. 23 18