BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0228200 Os03g0228200|AK059414
         (299 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19400.1  | chr1:6712222-6713676 REVERSE LENGTH=304            126   1e-29
AT1G75180.1  | chr1:28216150-28217911 REVERSE LENGTH=316          117   8e-27
AT1G01500.1  | chr1:185260-186573 FORWARD LENGTH=328               91   1e-18

>AT1G19400.1 | chr1:6712222-6713676 REVERSE LENGTH=304
          Length = 303

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 128/253 (50%), Gaps = 33/253 (13%)

Query: 18  SSWLSLKVFFLRVSRCEVNESMLDSVTVTHAPLTPDTVLEVSG---GSVASNGHVSLRLD 74
           S WL L+VF++R+S   V +S  + +T+ H PL PDT+LE++G   G  +  G   LR D
Sbjct: 31  SPWLDLRVFYVRISNFVVEDSTPEVLTINHIPLDPDTLLEINGVRMGMYSEGGSSQLRRD 90

Query: 75  RXXXXXXXXXXXXDSCTFVSTADVRVSGSARFDVQCRGERLVVGILDTRDA----GAGGG 130
           R            +  T+VST ++R++GS +F+V  + E ++ G L+   +    G    
Sbjct: 91  R-------VDKKSEEATYVSTDNIRLTGSVKFEVYDKNELVLSGTLEMSGSNGFTGESKN 143

Query: 131 GWVMKCQVAAQRGSGLVR----RGSKEAKP-PVVEVYVAGLARGAPVVFTRAMQLRFRRR 185
            W M C+     GSG ++     G + + P P +EVYV G   G P++ T+ +QL  +++
Sbjct: 144 RWKMNCEAEVTAGSGFLKEKSINGQELSSPLPTIEVYVTGCFSGTPIILTKTLQLGLKKK 203

Query: 186 RHVKAFMEPIPEH--GEPAEDSKETLPPKHETEVSEYRCYKPEQDAGDADYDGFYVKPAG 243
           +  +  ++ IPE+   EP +D+   L  +  TE   Y+    E+  GD  +         
Sbjct: 204 QSRRMALDAIPEYETAEPQKDTSYALDLQATTEYGNYK----EEYEGDMYWRS------- 252

Query: 244 EEDDDGDFSWFTA 256
            E  DG+ SWF A
Sbjct: 253 -ECIDGEMSWFNA 264



>AT1G75180.1 | chr1:28216150-28217911 REVERSE LENGTH=316
          Length = 315

 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 129/249 (51%), Gaps = 31/249 (12%)

Query: 25  VFFLRVSRCEVNESMLDSVTVTHAPLTPDTVLEVSG--GSVASNGHVS-LRLDRXXXXXX 81
           VF++R+S  +V+ S  + +T+TH PL PD++LE++G   S+ S G  S LR DR      
Sbjct: 42  VFYVRISNFKVDHSTPEVLTITHIPLDPDSLLEINGVRMSMYSEGVSSQLRRDR------ 95

Query: 82  XXXXXXDSCTFVSTADVRVSGSARFDVQCRGERLVVGILDTRDAGAGGGG-------WVM 134
                 +  TF+ST ++R+SGS +F+V  + E ++ G L+   +    G        W M
Sbjct: 96  -VDKKSEVATFISTDNIRLSGSVKFEVYDKDELVLSGTLEMSGSNGFTGESKHSVKRWNM 154

Query: 135 KCQVAAQRGSGLVRR----GSKEAKP-PVVEVYVAGLARGAPVVFTRAMQLRFRRRRHVK 189
            C+      SG ++     GS+ + P P +EVYV G   G P++ T+ +QL FR++    
Sbjct: 155 NCEAEITAESGFLKEKHIGGSELSSPLPTIEVYVTGCFSGTPIILTKTLQLGFRKKHGRV 214

Query: 190 AFMEPIPEH--GEPAEDSKETLPPKHETEVSEYRCYKPEQDAGDADYDGFYVKPAGEEDD 247
             ++ IPE+   EP + +   L    + +V+EY  YK E +   +D    Y      + +
Sbjct: 215 TALDSIPEYETDEPHKGNSSEL----DYQVTEYGSYKQEYEGEHSD---MYWNREYADGE 267

Query: 248 DGDFSWFTA 256
           DG+ SWF A
Sbjct: 268 DGEMSWFNA 276



>AT1G01500.1 | chr1:185260-186573 FORWARD LENGTH=328
          Length = 327

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 118/264 (44%), Gaps = 40/264 (15%)

Query: 18  SSWLSLKVFFLRVSRCEVNESMLDSVTVTHAPLTPDTVLEVSGGSVASNGHVSLRLDRXX 77
           S+WL +++F++R++ C V E++ D +T+ H        LEV+G  V S+   SL+L R  
Sbjct: 40  SAWLEVRLFYVRIAPCVV-ENVPDFLTLRHPRRETGASLEVNGVRVPSSQTASLKLRRDR 98

Query: 78  XXXXXXXXXXDSCTFVSTADVRVSGSARFDVQCRGERLVVGILDTRDAGAGGG------- 130
                        T+VST  VRV+G   F+V    + ++ G LD  +     G       
Sbjct: 99  VDRESS-----EVTYVSTETVRVTGCVDFEVYDNEDMVLCGNLDRIEGAWNNGTVSDPKT 153

Query: 131 GWVMKCQVAAQRGSGLVRRGSKEAKP------PVVEVYVAGLARGAPVVFTRAMQLRFRR 184
           GW M C +A   G       S   +P      P VEVY+AG   G PV+ T+ +Q   RR
Sbjct: 154 GWGMDCYIAMGNGHVSGPSASVFFQPKFGVSSPSVEVYIAGCCGGVPVILTKTIQASPRR 213

Query: 185 R--RHVKAFMEPIPEHGEPAED----------SKETLPPKHETEVSEYRCYKPEQDAGDA 232
           +  RHV   ++ IPE  E  ++          ++++     E+EV EY       D  D 
Sbjct: 214 KVARHVT--LDAIPEDEEVGKEQDIGTIGDELARQSKVQMMESEVDEY-------DDSDM 264

Query: 233 DYDGFYVKPAGEEDDDGDFSWFTA 256
                Y       D+DG  SWF A
Sbjct: 265 KMAQRYYPEGMYVDEDGQLSWFNA 288



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,877,000
Number of extensions: 243576
Number of successful extensions: 660
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 3
Length of query: 299
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 201
Effective length of database: 8,419,801
Effective search space: 1692380001
Effective search space used: 1692380001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)