Os03g0227300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 5'-3' exonuclease domain containing protein.
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Os03g0227300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 5'-3' exonuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.27 | 0.275 | 9.01 | 0.188 | 0.475 | -0.942 | -0.182 | 2.3 | -0.446 | 10.6 | 23.7 | 2425 | -- | -- |
| 33.65 | 0.27 | 9.04 | -0.196 | 0.593 | -0.905 | -0.229 | -- | -0.409 | 10.8 | 18.66 | 8995 | -- | -- |
| 34.39 | 0.273 | 9.02 | 0.174 | 0.476 | -0.936 | -- | 2.25 | -0.446 | 10.7 | 23.47 | 2409 | -- | -- |
| 33.9 | 0.271 | 9.04 | -0.2 | 0.594 | -0.893 | -- | -- | -0.402 | 10.8 | 18.64 | 8946 | -- | -- |
| 47.01 | 0.319 | 8.99 | 0.446 | -- | -1.16 | -- | 3.37 | -0.363 | -- | 24.1 | 2335 | -- | -- |
| 53.6 | 0.343 | 9.11 | -0.699 | 0.613 | -- | -0.214 | -- | -0.73 | 10.8 | -- | -- | -- | -- |
| 53.8 | 0.343 | 9.11 | -0.707 | 0.614 | -- | -- | -- | -0.73 | 10.9 | -- | -- | -- | -- |
| 53.25 | 0.34 | 9.05 | -0.335 | -- | -0.844 | -- | -- | -0.394 | -- | 22.68 | 9537 | -- | -- |
| 34.51 | 0.274 | 9.03 | -- | 0.605 | -1.02 | -- | -- | -0.344 | 10.8 | 17.64 | 8973 | -- | -- |
| 77.15 | 0.41 | 9.13 | -0.72 | -- | -- | -- | -- | -0.734 | -- | -- | -- | -- | -- |
| 66.99 | 0.383 | 9.1 | -- | 0.619 | -- | -- | -- | -0.651 | 10.9 | -- | -- | -- | -- |
| 53.77 | 0.342 | 9.04 | -- | -- | -1.08 | -- | -- | -0.331 | -- | 17.82 | 9549 | -- | -- |
| 90.84 | 0.445 | 9.11 | -- | -- | -- | -- | -- | -0.654 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 2 | 34.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 3 | 34.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 12 | 35.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 13 | 35.12 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 14 | 35.13 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 24 | 35.24 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 25 | 35.25 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 30 | 35.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 33 | 35.31 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 39 | 35.35 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 61 | 35.38 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 81 | 35.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 85 | 35.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 90 | 35.48 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 91 | 35.49 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 98 | 35.50 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 20 |
| 101 | 35.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 110 | 35.52 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 20 |
| 151 | 35.58 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 157 | 35.59 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 158 | 35.59 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 17 |
| 164 | 35.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 202 | 35.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 275 | 35.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 289 | 35.69 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 300 | 35.69 | temperature | 20 | 14400 | > th | dose dependent | sin | 16 | NA |
| 327 | 35.71 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 18 |
| 341 | 35.72 | temperature | 25 | 14400 | < th | dose independent | rect. | 22 | 18 |
| 455 | 35.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 466 | 35.77 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 471 | 35.77 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 484 | 35.78 | temperature | 25 | 14400 | < th | dose independent | sin | 17 | NA |
| 522 | 35.79 | temperature | 25 | 14400 | < th | dose independent | no | NA | NA |
| 524 | 35.79 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 525 | 35.79 | temperature | 25 | 14400 | > th | dose independent | rect. | 2 | 13 |
| 526 | 35.79 | temperature | 25 | 14400 | < th | dose independent | rect. | 1 | 14 |
| 540 | 35.79 | temperature | 25 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 543 | 35.79 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 556 | 35.80 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 580 | 35.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 599 | 35.81 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 602 | 35.81 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 615 | 35.81 | temperature | 25 | 14400 | > th | dose independent | rect. | 2 | 22 |
| 620 | 35.81 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 637 | 35.82 | temperature | 25 | 14400 | > th | dose independent | sin | 16 | NA |
| 655 | 35.82 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 657 | 35.82 | temperature | 25 | 1440 | > th | dose dependent | sin | 0 | NA |
| 755 | 35.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 758 | 35.85 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 11 |
| 769 | 35.85 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 890 | 35.89 | temperature | 25 | 14400 | < th | dose independent | sin | 3 | NA |
| 933 | 35.90 | temperature | 25 | 14400 | > th | dose independent | sin | 4 | NA |
| 934 | 35.90 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 2 |